Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g121340 Amaranthus hybridus HOM05D003267 ORTHO05D003955 1.0e-38 162.9 81 100.0
Ah.03g147760 Amaranthus hybridus HOM05D003267 ORTHO05D003955 4.9e-17 90.9 49 93.9
EL10Ac6g15325 Beta vulgaris HOM05D003267 ORTHO05D003955 2.4e-16 88.6 49 91.8
AUR62003552 Chenopodium quinoa HOM05D003267 ORTHO05D003955 1.6e-15 85.9 49 85.7
AUR62017866 Chenopodium quinoa HOM05D003267 ORTHO05D003955 1.6e-15 85.9 49 85.7
Sc23g0003840 Simmondsia chinensis HOM05D003267 ORTHO05D003955 2.7e-15 85.1 49 87.8
Rhsim05G0117100 Rhododendron simsii HOM05D003267 ORTHO05D003955 3.5e-15 84.7 51 80.4
TAR365G0992 Trochodendron aralioides HOM05D003267 ORTHO05D003955 4.6e-15 84.3 61 73.8
Hma1.2p1_0157F.1_g069480 Hydrangea macrophylla HOM05D003267 ORTHO05D003955 6.0e-15 84.0 49 85.7
Lj5C313G5 Lonicera japonica HOM05D003267 ORTHO05D003955 1.0e-14 83.2 49 83.7
Oeu006062.1 Olea europaea HOM05D003267 ORTHO05D003955 1.0e-14 83.2 61 72.1
Actinidia22843 Actinidia chinensis HOM05D003267 ORTHO05D003955 1.3e-14 82.8 61 68.9
Solyc01g102480.3 Solanum lycopersicum HOM05D003267 ORTHO05D003955 1.3e-14 82.8 61 70.5
Actinidia17726 Actinidia chinensis HOM05D003267 ORTHO05D003955 1.7e-14 82.4 49 81.6
CSS0001783 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 1.7e-14 82.4 61 70.5
CSS0029776 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 1.7e-14 82.4 61 70.5
CSS0009396 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 2.3e-14 82.0 61 68.9
CSS0023239 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 2.3e-14 82.0 61 68.9
CDE05G1830 Ceratophyllum demersum HOM05D003267 ORTHO05D003955 2.3e-14 82.0 49 79.6
CDE11G0971 Ceratophyllum demersum HOM05D003267 ORTHO05D003955 2.3e-14 82.0 49 79.6
MBI18_g03886_MAGBIO Magnolia biondii HOM05D003267 ORTHO05D003955 3.0e-14 81.6 61 68.9
Sopen01g044920 Solanum pennellii HOM05D003267 ORTHO05D003955 3.0e-14 81.6 49 81.6
PGSC0003DMG400018231 Solanum tuberosum HOM05D003267 ORTHO05D003955 3.0e-14 81.6 49 81.6
Aqoxy5G02882 Aquilegia oxysepala HOM05D003267 ORTHO05D003955 3.9e-14 81.3 61 67.2
DCAR_001878 Daucus carota HOM05D003267 ORTHO05D003955 3.9e-14 81.3 49 75.5
Nitab4.5_0004090g0130 Nicotiana tabacum HOM05D003267 ORTHO05D003955 3.9e-14 81.3 49 81.6
Nitab4.5_0004889g0020 Nicotiana tabacum HOM05D003267 ORTHO05D003955 3.9e-14 81.3 49 81.6
Hund04395 Selenicereus undatus HOM05D003267 ORTHO05D003955 3.9e-14 81.3 49 81.6
Cc02_g36900 Coffea canephora HOM05D003267 ORTHO05D003955 5.0e-14 80.9 69 63.8
MBI18_g28943_MAGBIO Magnolia biondii HOM05D003267 ORTHO05D003955 6.6e-14 80.5 49 81.6
Peaxi162Scf00071g00134 Petunia axillaris HOM05D003267 ORTHO05D003955 6.6e-14 80.5 61 65.6
PSO761G0395 Papaver somniferum HOM05D003267 ORTHO05D003955 8.6e-14 80.1 61 67.2
Hund12702 Selenicereus undatus HOM05D003267 ORTHO05D003955 8.6e-14 80.1 49 79.6
DCAR_003255 Daucus carota HOM05D003267 ORTHO05D003955 1.1e-13 79.7 49 77.6
HanXRQChr16g0518801 Helianthus annuus HOM05D003267 ORTHO05D003955 1.1e-13 79.7 49 79.6
Hma1.2p1_0052F.1_g030220 Hydrangea macrophylla HOM05D003267 ORTHO05D003955 1.1e-13 79.7 49 77.6
Oeu033227.1 Olea europaea HOM05D003267 ORTHO05D003955 1.1e-13 79.7 46 78.3
PSO210G5864 Papaver somniferum HOM05D003267 ORTHO05D003955 1.1e-13 79.7 61 67.2
Peaxi162Scf00194g00520 Petunia axillaris HOM05D003267 ORTHO05D003955 1.1e-13 79.7 49 79.6
CAN.G1379.38 Capsicum annuum HOM05D003267 ORTHO05D003955 1.5e-13 79.3 49 79.6
Migut.B00681 Erythranthe guttata HOM05D003267 ORTHO05D003955 1.9e-13 79.0 61 67.2
HanXRQChr10g0293521 Helianthus annuus HOM05D003267 ORTHO05D003955 1.9e-13 79.0 49 75.5
Lsat_1_v5_gn_5_101860 Lactuca sativa HOM05D003267 ORTHO05D003955 1.9e-13 79.0 49 75.5
Lsat_1_v5_gn_9_84121 Lactuca sativa HOM05D003267 ORTHO05D003955 1.9e-13 79.0 49 75.5
Sed0000167 Sechium edule HOM05D003267 ORTHO05D003955 1.9e-13 79.0 58 74.1
ClCG02G014560 Citrullus lanatus HOM05D003267 ORTHO05D003955 2.5e-13 78.6 58 74.1
MELO3C004140.2 Cucumis melo HOM05D003267 ORTHO05D003955 2.5e-13 78.6 58 74.1
Rhsim11G0111200 Rhododendron simsii HOM05D003267 ORTHO05D003955 2.5e-13 78.6 61 65.6
SEGI_26227 Sequoiadendron giganteum HOM05D003267 ORTHO05D003955 2.5e-13 78.6 49 77.6
MSTRG.5177 Avicennia marina HOM05D003267 ORTHO05D003955 3.3e-13 78.2 49 77.6
DCAR_022330 Daucus carota HOM05D003267 ORTHO05D003955 3.3e-13 78.2 49 75.5
Lj9A239T58 Lonicera japonica HOM05D003267 ORTHO05D003955 3.3e-13 78.2 69 60.9
Nn4g25260 Nelumbo nucifera HOM05D003267 ORTHO05D003955 3.3e-13 78.2 49 79.6
ECA236G4154 Erigeron canadensis HOM05D003267 ORTHO05D003955 4.3e-13 77.8 49 77.6
vmacro01648 Vaccinium macrocarpon HOM05D003267 ORTHO05D003955 4.3e-13 77.8 49 75.5
MSTRG.20347 Avicennia marina HOM05D003267 ORTHO05D003955 5.6e-13 77.4 61 65.6
ECA234G4544 Erigeron canadensis HOM05D006915 ORTHO05D003955 5.6e-13 77.4 49 73.5
HanXRQChr07g0193681 Helianthus annuus HOM05D003267 ORTHO05D003955 5.6e-13 77.4 49 75.5
Hund23017 Selenicereus undatus HOM05D003267 ORTHO05D003955 5.6e-13 77.4 49 77.6
THA.LOC104802767 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 5.6e-13 77.4 54 72.2
CsaV3_2G007450 Cucumis sativus L. HOM05D003267 ORTHO05D003955 7.3e-13 77.0 58 72.4
Migut.N00992 Erythranthe guttata HOM05D003267 ORTHO05D003955 7.3e-13 77.0 61 63.9
Sed0022970 Sechium edule HOM05D003267 ORTHO05D003955 7.3e-13 77.0 58 70.7
TWI12G0658 Tripterygium wilfordii HOM05D003267 ORTHO05D003955 7.3e-13 77.0 61 65.6
AL6G38390 Arabidopsis lyrata HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
AT5G26740 Arabidopsis thaliana HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
BcaNung02822 Brassica carinata HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
BcaNung03960 Brassica carinata HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
A06p36810 Brassica napus HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
C07p41680 Brassica napus HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
BolC7t44703H Brassica oleracea HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
BraA06t26607Z Brassica rapa HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
CANSAT54G1010 Cannabis sativa HOM05D003267 ORTHO05D003955 9.5e-13 76.6 54 72.2
Carub.0006s2419 Capsella rubella HOM05D003267 ORTHO05D003955 9.5e-13 76.6 42 88.1
PGR119G1814 Punica granatum HOM05D003267 ORTHO05D003955 9.5e-13 76.6 46 80.4
BcaB07g29962 Brassica carinata HOM05D003267 ORTHO05D003955 1.2e-12 76.3 42 85.7
BcaC03g17868 Brassica carinata HOM05D003267 ORTHO05D003955 1.2e-12 76.3 42 85.7
A02p39360 Brassica napus HOM05D003267 ORTHO05D003955 1.2e-12 76.3 42 85.7
C02p59090 Brassica napus HOM05D003267 ORTHO05D003955 1.2e-12 76.3 42 85.7
BolC2t11964H Brassica oleracea HOM05D003267 ORTHO05D003955 1.2e-12 76.3 42 85.7
BraA02t08901Z Brassica rapa HOM05D003267 ORTHO05D003955 1.2e-12 76.3 42 85.7
Sp2g21400 Schrenkiella parvula HOM05D003267 ORTHO05D003955 1.2e-12 76.3 42 85.7
Aa31LG11G10050 Aethionema arabicum HOM05D003267 ORTHO05D003955 1.6e-12 75.9 42 85.7
MSTRG.27901 Avicennia marina HOM05D003267 ORTHO05D003955 1.6e-12 75.9 49 75.5
SGA_v2.0_scaffold131G34450 Striga asiatica HOM05D003267 ORTHO05D003955 1.6e-12 75.9 49 73.5
SGA_v2.0_scaffold311G48247 Striga asiatica HOM05D003267 ORTHO05D003955 1.6e-12 75.9 61 63.9
CARHR186990 Cardamine hirsuta HOM05D003267 ORTHO05D003955 2.8e-12 75.1 42 85.7
Ciclev10028530m.g Citrus clementina HOM05D003267 ORTHO05D003955 2.8e-12 75.1 44 79.5
Thhalv10004284m.g Eutrema salsugineum HOM05D003267 ORTHO05D003955 2.8e-12 75.1 42 85.7
RcHm_v2.0_Chr3g0459061 Rosa chinensis HOM05D003267 ORTHO05D003955 4.7e-12 74.3 42 83.3
FvH4_6g08800 Fragaria vesca HOM05D003267 ORTHO05D003955 6.2e-12 73.9 42 83.3
MD12G1196900 Malus domestica HOM05D003267 ORTHO05D003955 6.2e-12 73.9 42 85.7
Prupe.6G302000 Prunus persica HOM05D003267 ORTHO05D003955 6.2e-12 73.9 54 72.2
COL.COLO4_05471 Corchorus olitorius HOM05D003267 ORTHO05D003955 8.1e-12 73.6 54 70.4
Eucgr.B01358 Eucalyptus grandis HOM05D003267 ORTHO05D003955 1.1e-11 73.2 58 69.0
Lalb_Chr06g0167191 Lupinus albus HOM05D003267 ORTHO05D003955 1.1e-11 73.2 42 78.6
MD04G1183500 Malus domestica HOM05D003267 ORTHO05D003955 1.1e-11 73.2 42 85.7
Psat0s4029g0080 Pisum sativum HOM05D003267 ORTHO05D003955 1.1e-11 73.2 61 60.7
THA.LOC104818769 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 1.1e-11 73.2 54 68.5
TPR.G8397 Trifolium pratense HOM05D003267 ORTHO05D003955 1.1e-11 73.2 46 73.9
Thhalv10020796m.g Eutrema salsugineum HOM05D003267 ORTHO05D003955 1.4e-11 72.8 58 63.8
Potri.005G000232 Populus trichocarpa HOM05D003267 ORTHO05D003955 1.4e-11 72.8 59 61.0
Cpa.g.sc19.30 Carica papaya HOM05D003267 ORTHO05D003955 1.8e-11 72.4 54 68.5
Duzib128G1544 Durio zibethinus HOM05D003267 ORTHO05D003955 1.8e-11 72.4 54 70.4
Duzib177G0095 Durio zibethinus HOM05D003267 ORTHO05D003955 1.8e-11 72.4 54 70.4
Manes.08G105800 Manihot esculenta HOM05D003267 ORTHO05D003955 1.8e-11 72.4 44 77.3
Medtr7g111160 Medicago truncatula HOM05D003267 ORTHO05D003955 1.8e-11 72.4 58 63.8
Thecc.05G331700 Theobroma cacao HOM05D003267 ORTHO05D003955 1.8e-11 72.4 54 70.4
AL3G16730 Arabidopsis lyrata HOM05D003267 ORTHO05D003955 2.3e-11 72.0 46 73.9
Cfa004400 Carpinus fangiana HOM05D003267 ORTHO05D003955 2.3e-11 72.0 61 63.9
Ca_09264_v3 Cicer arietinum L. HOM05D003267 ORTHO05D003955 2.3e-11 72.0 58 62.1
Potri.005G000600 Populus trichocarpa HOM05D003267 ORTHO05D003955 2.3e-11 72.0 46 78.3
Sabra05G0013400 Salix brachista HOM05D003267 ORTHO05D003955 2.3e-11 72.0 46 78.3
AT3G05940 Arabidopsis thaliana HOM05D003267 ORTHO05D003955 3.1e-11 71.6 46 73.9
Carub.0003s0534 Capsella rubella HOM05D003267 ORTHO05D003955 3.1e-11 71.6 46 73.9
CARHR080430 Cardamine hirsuta HOM05D003267 ORTHO05D003955 3.1e-11 71.6 46 73.9
Gohir.A11G275900 Gossypium hirsutum HOM05D003267 ORTHO05D003955 3.1e-11 71.6 58 67.2
Gohir.D11G286300 Gossypium hirsutum HOM05D003267 ORTHO05D003955 3.1e-11 71.6 58 67.2
Gorai.007G309700 Gossypium raimondii HOM05D003267 ORTHO05D003955 3.1e-11 71.6 58 67.2
Sp3g04860 Schrenkiella parvula HOM05D003267 ORTHO05D003955 3.1e-11 71.6 46 73.9
Aa31LG5G16380 Aethionema arabicum HOM05D003267 ORTHO05D003955 5.2e-11 70.9 54 64.8
arahy.Tifrunner.gnm1.ann1.23D8N6 Arachis hypogaea HOM05D003267 ORTHO05D003955 6.8e-11 70.5 54 66.7
arahy.Tifrunner.gnm1.ann1.X07PWR Arachis hypogaea HOM05D003267 ORTHO05D003955 6.8e-11 70.5 54 66.7
Lj1g0010587 Lotus japonicus HOM05D003267 ORTHO05D003955 6.8e-11 70.5 44 72.7
Lj5g0007569 Lotus japonicus HOM05D003267 ORTHO05D003955 6.8e-11 70.5 58 60.3
Lalb_Chr07g0193041 Lupinus albus HOM05D003267 ORTHO05D003955 6.8e-11 70.5 49 69.4
PGR031G3159 Punica granatum HOM05D003267 ORTHO05D003955 6.8e-11 70.5 58 65.5
QL03p011428 Quercus lobata HOM05D003267 ORTHO05D003955 6.8e-11 70.5 54 66.7
Glyma.03G226700 Glycine max HOM05D003267 ORTHO05D003955 8.9e-11 70.1 46 71.7
CiPaw.02G000200 Carya illinoinensis HOM05D003267 ORTHO05D003955 1.2e-10 69.7 45 77.8
arahy.Tifrunner.gnm1.ann1.RKP3NC Arachis hypogaea HOM05D003267 ORTHO05D003955 1.5e-10 69.3 46 73.9
arahy.Tifrunner.gnm1.ann1.X4I5LU Arachis hypogaea HOM05D003267 ORTHO05D003955 1.5e-10 69.3 46 73.9
THA.LOC104822291 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 1.5e-10 69.3 61 59.0
A05p42110 Brassica napus HOM05D003267 ORTHO05D003955 2.0e-10 68.9 46 71.7
BraA05t22929Z Brassica rapa HOM05D003267 ORTHO05D003955 2.0e-10 68.9 46 71.7
Eucgr.H01351 Eucalyptus grandis HOM05D003267 ORTHO05D003955 2.0e-10 68.9 42 81.0
VMungo1383G0366 Vigna mungo HOM05D003267 ORTHO05D003955 2.0e-10 68.9 42 73.8
BcaC05g30076 Brassica carinata HOM05D003267 ORTHO05D003955 2.6e-10 68.6 46 69.6
BolC5t34791H Brassica oleracea HOM05D003267 ORTHO05D003955 2.6e-10 68.6 46 69.6
Glyma.10G141000 Glycine max HOM05D003267 ORTHO05D003955 3.4e-10 68.2 49 67.3
Glyma.19G223700 Glycine max HOM05D003267 ORTHO05D003955 3.4e-10 68.2 46 69.6
Phvul.001G220600 Phaseolus vulgaris HOM05D003267 ORTHO05D003955 3.4e-10 68.2 58 58.6
Phvul.007G207100 Phaseolus vulgaris HOM05D003267 ORTHO05D003955 3.4e-10 68.2 61 59.0
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 3.4e-10 68.2 61 59.0
Atru.chr12.1498 Acer truncatum HOM05D003267 ORTHO05D003955 4.4e-10 67.8 49 69.4
C05p61320 Brassica napus HOM05D003267 ORTHO05D003955 7.5e-10 67.0 46 67.4
Glyma.20G089700 Glycine max HOM05D003267 ORTHO05D003955 9.9e-10 66.6 61 57.4
SHI18005 Sapria himalayana HOM05D003267 ORTHO05D003955 1.7e-09 65.9 48 70.8
SEGI_24145 Sequoiadendron giganteum HOM05D003267 ORTHO05D003955 2.2e-09 65.5 49 63.3
Pp3c7_6310 Physcomitrium patens HOM05D003267 ORTHO05D003955 1.1e-08 63.2 61 57.4
SMO334G0078 Selaginella moellendorffii HOM05D003267 ORTHO05D003955 1.9e-08 62.4 37 75.7
Pp3c11_20710 Physcomitrium patens HOM05D003267 ORTHO05D003955 9.2e-08 60.1 49 61.2
unitig_26.g9012 Utricularia gibba HOM05D003267 ORTHO05D003955 7.8e-07 57.0 30 83.3
Mapoly0177s0009 Marchantia polymorpha HOM05D003267 ORTHO05D003955 1.0e-06 56.6 49 57.1
Os03g0827600 Oryza sativa ssp. japonica HOM05D003267 ORTHO05D003955 3.0e-06 55.1 44 56.8
ATR0693G156 Amborella trichopoda HOM05D003267 ORTHO05D003955 3.9e-06 54.7 28 82.1
Pp3c1_20320 Physcomitrium patens HOM05D003267 ORTHO05D003955 3.9e-06 54.7 36 63.9


User provided reference genes

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