Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g121020 Amaranthus hybridus HOM05D002740 ORTHO05D003126 8.4e-134 480.3 237 100.0
Ah.02g121130 Amaranthus hybridus HOM05D002740 ORTHO05D003126 9.4e-77 290.8 236 63.6
EL10Ac2g03423 Beta vulgaris HOM05D002740 ORTHO05D003126 2.2e-65 253.1 236 55.5
EL10Ac4g09201 Beta vulgaris HOM05D002740 ORTHO05D003126 4.8e-57 225.3 237 53.2
AUR62000632 Chenopodium quinoa HOM05D002740 ORTHO05D003126 2.3e-22 110.2 292 29.5
AUR62006985 Chenopodium quinoa HOM05D002740 ORTHO05D003126 2.3e-22 110.2 292 29.5
EL10Ac4g09762 Beta vulgaris HOM05D002740 ORTHO05D003126 7.3e-21 105.1 292 28.8
Sabra13G0045500 Salix brachista HOM05D002740 ORTHO05D003126 6.2e-20 102.1 290 28.6
Potri.013G049300 Populus trichocarpa HOM05D002740 ORTHO05D003126 2.6e-18 96.7 292 29.1
Hund07176 Selenicereus undatus HOM05D002740 ORTHO05D003126 2.6e-18 96.7 292 27.7
RcHm_v2.0_Chr3g0449211 Rosa chinensis HOM05D002740 ORTHO05D003126 7.6e-18 95.1 290 28.6
Peaxi162Scf00077g00094 Petunia axillaris HOM05D002740 ORTHO05D003126 9.9e-18 94.7 291 26.5
CAN.G94.6 Capsicum annuum HOM05D002740 ORTHO05D003126 2.9e-17 93.2 291 26.5
Potri.019G022700 Populus trichocarpa HOM05D002740 ORTHO05D003126 2.9e-17 93.2 292 28.4
vmacro19980 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 2.9e-17 93.2 292 25.7
Atru.chr2.1110 Acer truncatum HOM05D002740 ORTHO05D003126 6.4e-17 92.0 291 27.5
TAR365G1151 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.4e-17 92.0 293 28.7
TAR365G0402 Trochodendron aralioides HOM05D002740 ORTHO05D003126 8.4e-17 91.7 293 28.7
FAN14G4679 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.1e-16 91.3 290 27.6
Thecc.05G266800 Theobroma cacao HOM05D002740 ORTHO05D003126 1.1e-16 91.3 290 28.3
PGR004G1282 Punica granatum HOM05D002740 ORTHO05D003126 1.4e-16 90.9 291 27.1
TWI60G0984 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 1.4e-16 90.9 289 28.7
FAN14G2846 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.9e-16 90.5 290 27.6
Ah.06g187970 Amaranthus hybridus HOM05D002740 ORTHO05D003126 2.4e-16 90.1 292 26.7
Duzib106G0100 Durio zibethinus HOM05D002740 ORTHO05D003126 2.4e-16 90.1 292 26.7
FvH4_6g01520 Fragaria vesca HOM05D002740 ORTHO05D003126 2.4e-16 90.1 290 27.6
FAN05G0538 Fragaria x ananassa HOM05D002740 ORTHO05D003126 2.4e-16 90.1 290 27.6
FAN05G2066 Fragaria x ananassa HOM05D002740 ORTHO05D003126 2.4e-16 90.1 290 27.6
TAR633G0934 Trochodendron aralioides HOM05D002740 ORTHO05D003126 4.2e-16 89.4 293 25.9
Ciclev10030905m.g Citrus clementina HOM05D002740 ORTHO05D003126 7.1e-16 88.6 292 27.1
FAN09G1477 Fragaria x ananassa HOM05D002740 ORTHO05D003126 7.1e-16 88.6 290 27.6
Prupe.6G352500 Prunus persica HOM05D002740 ORTHO05D003126 7.1e-16 88.6 289 27.0
AT5G32470 Arabidopsis thaliana HOM05D002740 ORTHO05D003126 1.2e-15 87.8 289 25.3
MD04G1232700 Malus domestica HOM05D002740 ORTHO05D003126 1.2e-15 87.8 294 26.9
Nitab4.5_0000841g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.2e-15 87.8 291 25.1
QL03p029148 Quercus lobata HOM05D002740 ORTHO05D003126 1.2e-15 87.8 292 28.8
THA.LOC104823789 Tarenaya hassleriana HOM05D002740 ORTHO05D003126 1.2e-15 87.8 291 26.8
Dinv07505 Davidia involucrata HOM05D002740 ORTHO05D003126 1.6e-15 87.4 293 26.6
Nitab4.5_0002088g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.1e-15 87.0 291 24.7
Sopen04g020910 Solanum pennellii HOM05D002740 ORTHO05D003126 2.1e-15 87.0 291 25.4
MSTRG.8171 Avicennia marina HOM05D002740 ORTHO05D003126 2.7e-15 86.7 292 28.1
BcaB04g18093 Brassica carinata HOM05D002740 ORTHO05D003126 2.7e-15 86.7 286 26.9
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 2.7e-15 86.7 292 28.1
A08p10090 Brassica napus HOM05D002740 ORTHO05D003126 3.5e-15 86.3 286 26.6
Hma1.2p1_0130F.1_g060480 Hydrangea macrophylla HOM05D002740 ORTHO05D003126 3.5e-15 86.3 291 27.1
BcaC07g37707 Brassica carinata HOM05D002740 ORTHO05D003126 4.6e-15 85.9 286 26.6
BolC8t48073H Brassica oleracea HOM05D002740 ORTHO05D003126 4.6e-15 85.9 286 26.6
BraA08t33006Z Brassica rapa HOM05D002740 ORTHO05D003126 4.6e-15 85.9 286 26.6
COL.COLO4_15534 Corchorus olitorius HOM05D002740 ORTHO05D003126 4.6e-15 85.9 289 26.6
Migut.F02056 Erythranthe guttata HOM05D002740 ORTHO05D003126 4.6e-15 85.9 291 27.5
Gohir.D08G234800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 4.6e-15 85.9 290 26.6
Solyc04g050190.4 Solanum lycopersicum HOM05D002740 ORTHO05D003126 4.6e-15 85.9 291 25.1
CANSAT54G3003 Cannabis sativa HOM05D002740 ORTHO05D003126 6.0e-15 85.5 290 26.9
ECA238G0995 Erigeron canadensis HOM05D002740 ORTHO05D003126 6.0e-15 85.5 298 26.5
AL7G43640 Arabidopsis lyrata HOM05D002740 ORTHO05D003126 7.8e-15 85.1 290 24.8
Carub.0007s3054 Capsella rubella HOM05D002740 ORTHO05D003126 7.8e-15 85.1 290 24.8
Eucgr.H04213 Eucalyptus grandis HOM05D002740 ORTHO05D003126 7.8e-15 85.1 290 26.2
Sp7g07700 Schrenkiella parvula HOM05D002740 ORTHO05D003126 7.8e-15 85.1 289 25.3
CARHR217090 Cardamine hirsuta HOM05D002740 ORTHO05D003126 1.0e-14 84.7 289 25.3
Duzib128G1958 Durio zibethinus HOM05D002740 ORTHO05D003126 1.0e-14 84.7 290 27.2
Gorai.004G249600 Gossypium raimondii HOM05D002740 ORTHO05D003126 1.3e-14 84.3 289 26.6
Manes.08G140900 Manihot esculenta HOM05D002740 ORTHO05D003126 1.3e-14 84.3 294 26.5
SGA_v2.0_scaffold62G21468 Striga asiatica HOM05D002740 ORTHO05D003126 1.3e-14 84.3 302 27.5
Ah.02g118370 Amaranthus hybridus HOM05D002740 ORTHO05D003126 1.7e-14 84.0 291 26.5
Lj2A46T69 Lonicera japonica HOM05D002740 ORTHO05D003126 1.7e-14 84.0 292 27.1
Sc16g0010200 Simmondsia chinensis HOM05D002740 ORTHO05D003126 1.7e-14 84.0 291 24.7
Nn1g02994 Nelumbo nucifera HOM05D002740 ORTHO05D003126 2.3e-14 83.6 292 25.7
Gorai.007G273300 Gossypium raimondii HOM05D002740 ORTHO05D003126 3.0e-14 83.2 290 25.9
Aa31LG9G18030 Aethionema arabicum HOM05D002740 ORTHO05D003126 3.9e-14 82.8 289 26.0
Gohir.D11G254700 Gossypium hirsutum HOM05D002740 ORTHO05D003126 3.9e-14 82.8 290 26.2
Peaxi162Scf00156g00620 Petunia axillaris HOM05D002740 ORTHO05D003126 3.9e-14 82.8 291 24.1
Gohir.A11G244600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 6.6e-14 82.0 290 25.9
MD12G1250300 Malus domestica HOM05D002740 ORTHO05D003126 6.6e-14 82.0 290 26.9
Peaxi162Scf00043g00272 Petunia axillaris HOM05D002740 ORTHO05D003126 6.6e-14 82.0 292 25.3
Psat6g144200 Pisum sativum HOM05D002740 ORTHO05D003126 6.6e-14 82.0 284 25.7
PSO832G0576 Papaver somniferum HOM05D002740 ORTHO05D003126 8.7e-14 81.6 296 25.7
Thhalv10002337m.g Eutrema salsugineum HOM05D002740 ORTHO05D003126 1.1e-13 81.3 284 25.4
TWI32G1314 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 1.1e-13 81.3 286 26.2
GSVIVG01001480001 Vitis vinifera HOM05D002740 ORTHO05D003126 1.1e-13 81.3 292 27.4
Manes.09G146900 Manihot esculenta HOM05D002740 ORTHO05D003126 1.5e-13 80.9 290 26.6
Ca_10029_v3 Cicer arietinum L. HOM05D002740 ORTHO05D003126 1.9e-13 80.5 286 25.5
Manes.08G141500 Manihot esculenta HOM05D002740 ORTHO05D003126 2.5e-13 80.1 294 26.2
Nitab4.5_0002435g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.5e-13 80.1 293 25.9
TAR362G1135 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.5e-13 80.1 296 25.7
Aqoxy5G00131 Aquilegia oxysepala HOM05D002740 ORTHO05D003126 3.3e-13 79.7 296 25.3
Lj5g0022875 Lotus japonicus HOM05D002740 ORTHO05D003126 3.3e-13 79.7 286 25.2
PSO764G0261 Papaver somniferum HOM05D002740 ORTHO05D003126 3.3e-13 79.7 296 25.3
Nn3g19799 Nelumbo nucifera HOM05D002740 ORTHO05D003126 5.6e-13 79.0 291 25.4
Oeu010185.1 Olea europaea HOM05D002740 ORTHO05D003126 5.6e-13 79.0 293 26.3
Sed0005304 Sechium edule HOM05D002740 ORTHO05D003126 7.3e-13 78.6 293 27.3
Cc09_g02980 Coffea canephora HOM05D002740 ORTHO05D003126 9.6e-13 78.2 137 40.1
Sc09g0001850 Simmondsia chinensis HOM05D002740 ORTHO05D003126 9.6e-13 78.2 137 37.2
Actinidia06833 Actinidia chinensis HOM05D002740 ORTHO05D003126 1.3e-12 77.8 291 24.4
arahy.Tifrunner.gnm1.ann1.33UQPP Arachis hypogaea HOM05D002740 ORTHO05D003126 1.3e-12 77.8 286 24.8
CAN.G536.13 Capsicum annuum HOM05D002740 ORTHO05D003126 1.3e-12 77.8 292 25.3
Nitab4.5_0000845g0210 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.3e-12 77.8 294 25.5
Solyc09g064510.3 Solanum lycopersicum HOM05D002740 ORTHO05D003126 1.3e-12 77.8 290 24.1
HanXRQChr14g0443151 Helianthus annuus HOM05D002740 ORTHO05D003126 1.6e-12 77.4 291 26.8
Lalb_Chr02g0148991 Lupinus albus HOM05D002740 ORTHO05D003126 1.6e-12 77.4 286 25.5
ATR0787G107 Amborella trichopoda HOM05D002740 ORTHO05D003126 2.1e-12 77.0 291 24.7
SalBow1G0650 Salvia bowleyana HOM05D002740 ORTHO05D003126 2.1e-12 77.0 292 26.4
GSVIVG01028433001 Vitis vinifera HOM05D002740 ORTHO05D003126 2.1e-12 77.0 292 24.3
Sopen09g025670 Solanum pennellii HOM05D002740 ORTHO05D003126 2.8e-12 76.6 290 24.1
Phvul.008G137801 Phaseolus vulgaris HOM05D002740 ORTHO05D003126 3.6e-12 76.3 287 25.8
CsaV3_1G045030 Cucumis sativus L. HOM05D002740 ORTHO05D003126 4.8e-12 75.9 291 26.8
PGSC0003DMG400008580 Solanum tuberosum HOM05D002740 ORTHO05D003126 4.8e-12 75.9 293 24.9
ECA233G3395 Erigeron canadensis HOM05D002740 ORTHO05D003126 6.2e-12 75.5 280 23.9
MD05G1188600 Malus domestica HOM05D002740 ORTHO05D003126 6.2e-12 75.5 290 22.4
QL09p041531 Quercus lobata HOM05D002740 ORTHO05D003126 6.2e-12 75.5 290 23.1
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.2e-12 75.5 292 24.0
Oeu014442.1 Olea europaea HOM05D002740 ORTHO05D003126 8.1e-12 75.1 284 26.8
MELO3C010087.2 Cucumis melo HOM05D002740 ORTHO05D003126 1.1e-11 74.7 291 26.1
VMungo0720G1032 Vigna mungo HOM05D002740 ORTHO05D003126 1.1e-11 74.7 286 25.5
Glyma.20G226700 Glycine max HOM05D002740 ORTHO05D003126 1.4e-11 74.3 286 24.8
Lsat_1_v5_gn_8_2520 Lactuca sativa HOM05D002740 ORTHO05D003126 1.4e-11 74.3 297 25.3
Nitab4.5_0000476g0220 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.4e-11 73.6 291 24.7
CiPaw.07G070800 Carya illinoinensis HOM05D002740 ORTHO05D003126 4.0e-11 72.8 137 37.2
Sc22g0004590 Simmondsia chinensis HOM05D002740 ORTHO05D003126 4.0e-11 72.8 268 24.3
Gorai.001G182000 Gossypium raimondii HOM05D002740 ORTHO05D003126 5.3e-11 72.4 292 25.3
Gohir.D07G158800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 6.9e-11 72.0 292 25.3
Haze_04394 Corylus avellana HOM05D002740 ORTHO05D003126 9.0e-11 71.6 137 35.8
Glyma.10G164300 Glycine max HOM05D002740 ORTHO05D003126 9.0e-11 71.6 285 24.6
MBI16_g02733_MAGBIO Magnolia biondii HOM05D002740 ORTHO05D003126 1.5e-10 70.9 297 25.6
Prupe.8G215100 Prunus persica HOM05D002740 ORTHO05D003126 1.5e-10 70.9 134 32.1
CSS0016056 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 2.6e-10 70.1 155 33.5
ClCG03G011470 Citrullus lanatus HOM05D002740 ORTHO05D003126 3.4e-10 69.7 137 37.2
arahy.Tifrunner.gnm1.ann1.JB472D Arachis hypogaea HOM05D002740 ORTHO05D003126 5.8e-10 68.9 137 35.8
Gohir.A07G152600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 5.8e-10 68.9 291 25.1
Os08g0566000 Oryza sativa ssp. japonica HOM05D002740 ORTHO05D003126 7.6e-10 68.6 115 39.1
Duzib177G0935 Durio zibethinus HOM05D002740 ORTHO05D003126 1.3e-09 67.8 254 24.0
HanXRQChr14g0431491 Helianthus annuus HOM05D002740 ORTHO05D003126 1.3e-09 67.8 300 24.0
Zm00001eb175630 Zea mays HOM05D002740 ORTHO05D003126 1.7e-09 67.4 137 38.0
Lsat_1_v5_gn_2_16740 Lactuca sativa HOM05D002740 ORTHO05D003126 2.2e-09 67.0 300 24.3
Aa31LG2G2010 Aethionema arabicum HOM05D002740 ORTHO05D003126 2.9e-09 66.6 291 23.7
Cfa002487 Carpinus fangiana HOM05D002740 ORTHO05D003126 2.9e-09 66.6 115 35.7
Manes.13G039600 Manihot esculenta HOM05D002740 ORTHO05D003126 2.9e-09 66.6 294 21.8
Lj8A197T38 Lonicera japonica HOM05D002740 ORTHO05D003126 3.8e-09 66.2 117 35.9
CSS0008679 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 4.9e-09 65.9 274 25.5
CiPaw.04G190900 Carya illinoinensis HOM05D002740 ORTHO05D003126 4.9e-09 65.9 260 24.2
SMO203G0094 Selaginella moellendorffii HOM05D002740 ORTHO05D003126 4.9e-09 65.9 263 24.7
HanXRQChr11g0327251 Helianthus annuus HOM05D002740 ORTHO05D003126 6.4e-09 65.5 137 34.3
CDE08G1574 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 8.4e-09 65.1 291 23.7
HPP92_025821 Vanilla planifolia HOM05D002740 ORTHO05D003126 1.1e-08 64.7 133 33.8
Zm00001eb038600 Zea mays HOM05D002740 ORTHO05D003126 1.1e-08 64.7 137 37.2
AagrBONN_evm.TU.Sc2ySwM_228.5264 Anthoceros agrestis HOM05D002740 ORTHO05D003126 1.4e-08 64.3 284 24.3
Medtr1g080470 Medicago truncatula HOM05D002740 ORTHO05D003126 1.4e-08 64.3 137 33.6
Nitab4.5_0010891g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.9e-08 63.9 140 32.9
Haze_24709 Corylus avellana HOM05D002740 ORTHO05D003126 4.2e-08 62.8 112 35.7
DCAR_005516 Daucus carota HOM05D002740 ORTHO05D003126 7.1e-08 62.0 137 32.1
SalBow6G3005 Salvia bowleyana HOM05D002740 ORTHO05D003126 9.3e-08 61.6 112 28.6
Mapoly0061s0052 Marchantia polymorpha HOM05D002740 ORTHO05D003126 1.2e-07 61.2 280 24.3
TPR.G26625 Trifolium pratense HOM05D002740 ORTHO05D003126 1.2e-07 61.2 117 33.3
CSS0008677 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 1.6e-07 60.8 112 33.9
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 2.1e-07 60.5 137 33.6
TWI75G0335 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 2.1e-07 60.5 150 30.7
Dinv19266 Davidia involucrata HOM05D002740 ORTHO05D003126 2.7e-07 60.1 137 28.5
HanXRQChr10g0280201 Helianthus annuus HOM05D002740 ORTHO05D003126 2.7e-07 60.1 117 31.6
Cpa.g.sc87.32 Carica papaya HOM05D002740 ORTHO05D003126 4.6e-07 59.3 115 29.6
SGA_v2.0_scaffold42G16173 Striga asiatica HOM05D002740 ORTHO05D003126 1.0e-06 58.2 114 28.1
MSTRG.12516 Avicennia marina HOM05D002740 ORTHO05D003126 1.3e-06 57.8 112 29.5
PSO478G0119 Papaver somniferum HOM05D002740 ORTHO05D003126 1.7e-06 57.4 153 29.4
Cpa.g.sc51.3 Carica papaya HOM05D002740 ORTHO05D003126 3.0e-06 56.6 210 26.2
Ciclev10023610m.g Citrus clementina HOM05D002740 ORTHO05D003126 3.0e-06 56.6 115 32.2
SalBow1G8628 Salvia bowleyana HOM05D002740 ORTHO05D003126 3.0e-06 56.6 256 25.0
Oeu052082.1 Olea europaea HOM05D002740 ORTHO05D003126 3.9e-06 56.2 137 27.0
Thecc.01G249900 Theobroma cacao HOM05D002740 ORTHO05D003126 3.9e-06 56.2 138 30.4
CAN.G694.8 Capsicum annuum HOM05D002740 ORTHO05D003126 5.1e-06 55.8 140 32.1
vmacro02711 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 6.6e-06 55.5 112 33.0
CDE02G1172 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 8.7e-06 55.1 137 29.2


User provided reference genes

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