Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g120940 Amaranthus hybridus HOM05D001961 ORTHO05D002286 7.9e-55 216.9 109 100.0
Ah.02g120980 Amaranthus hybridus HOM05D001961 ORTHO05D002286 1.3e-44 183.0 109 89.9
Ah.02g113120 Amaranthus hybridus HOM05D001961 ORTHO05D002286 2.6e-21 105.5 60 90.0
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 1.9e-16 89.4 60 75.0
AUR62021754 Chenopodium quinoa HOM05D001961 ORTHO05D002286 2.3e-14 82.4 60 68.3
AUR62008343 Chenopodium quinoa HOM05D001961 ORTHO05D002286 2.6e-13 79.0 60 65.0
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.7e-12 76.3 60 58.3
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.7e-12 76.3 60 58.3
MD14G1192000 Malus domestica HOM05D001961 ORTHO05D002286 2.2e-12 75.9 59 62.7
Sc04g0002330 Simmondsia chinensis HOM05D001961 ORTHO05D002286 2.9e-12 75.5 60 63.3
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 2.9e-12 75.5 59 59.3
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 3.7e-12 75.1 60 58.3
Dinv38651 Davidia involucrata HOM05D001961 ORTHO05D002286 3.7e-12 75.1 60 58.3
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 4.9e-12 74.7 59 62.7
COL.COLO4_35465 Corchorus olitorius HOM05D001961 ORTHO05D002286 4.9e-12 74.7 60 61.7
FvH4_5g15740 Fragaria vesca HOM05D001961 ORTHO05D002286 4.9e-12 74.7 59 64.4
FAN18G4418 Fragaria x ananassa HOM05D001961 ORTHO05D002286 4.9e-12 74.7 59 64.4
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 4.9e-12 74.7 59 62.7
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 6.4e-12 74.3 59 61.0
Duzib068G1318 Durio zibethinus HOM05D001961 ORTHO05D002286 8.3e-12 73.9 60 61.7
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 8.3e-12 73.9 59 62.7
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.1e-11 73.6 59 62.7
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.4e-11 73.2 60 61.7
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.4e-11 73.2 60 61.7
MD06G1185800 Malus domestica HOM05D001961 ORTHO05D002286 1.4e-11 73.2 59 61.0
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.9e-11 72.8 59 62.7
FAN08G2604 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.9e-11 72.8 59 62.7
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 1.9e-11 72.8 60 61.7
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 2.4e-11 72.4 60 55.0
Cc04_g15870 Coffea canephora HOM05D001961 ORTHO05D002286 2.4e-11 72.4 59 57.6
Duzib205G1945 Durio zibethinus HOM05D001961 ORTHO05D002286 3.2e-11 72.0 60 60.0
GSVIVG01008079001 Vitis vinifera HOM05D001961 ORTHO05D002286 3.2e-11 72.0 60 56.7
Oeu020375.1 Olea europaea HOM05D001961 ORTHO05D002286 4.1e-11 71.6 62 53.2
SalBow7G0691 Salvia bowleyana HOM05D001961 ORTHO05D002286 4.1e-11 71.6 59 57.6
Hund02679 Selenicereus undatus HOM05D001961 ORTHO05D002286 4.1e-11 71.6 60 61.7
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 4.1e-11 71.6 59 61.0
Ah.11g048820 Amaranthus hybridus HOM05D001961 ORTHO05D002286 5.4e-11 71.2 59 62.7
CiPaw.11G036500 Carya illinoinensis HOM05D001961 ORTHO05D002286 5.4e-11 71.2 59 59.3
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 5.4e-11 71.2 60 60.0
Peaxi162Scf00009g00524 Petunia axillaris HOM05D001961 ORTHO05D002286 5.4e-11 71.2 58 60.3
Potri.012G071900 Populus trichocarpa HOM05D001961 ORTHO05D002286 5.4e-11 71.2 60 60.0
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 5.4e-11 71.2 59 57.6
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 7.0e-11 70.9 59 64.4
Sabra12G0051100 Salix brachista HOM05D001961 ORTHO05D002286 7.0e-11 70.9 60 60.0
TWI15G0443 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.2e-10 70.1 60 58.3
MSTRG.11404 Avicennia marina HOM05D001961 ORTHO05D002286 1.6e-10 69.7 62 56.5
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 1.6e-10 69.7 60 60.0
QL10p014886 Quercus lobata HOM05D001961 ORTHO05D002286 1.6e-10 69.7 59 59.3
MELO3C017148.2 Cucumis melo HOM05D001961 ORTHO05D002286 2.0e-10 69.3 70 55.7
Cpa.g.sc17.186 Carica papaya HOM05D001961 ORTHO05D002286 2.7e-10 68.9 58 58.6
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 2.7e-10 68.9 59 57.6
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 2.7e-10 68.9 59 57.6
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 2.7e-10 68.9 59 57.6
CsaV3_1G002070 Cucumis sativus L. HOM05D001961 ORTHO05D002286 2.7e-10 68.9 70 55.7
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 2.7e-10 68.9 59 59.3
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 2.7e-10 68.9 59 59.3
HanXRQChr05g0155261 Helianthus annuus HOM05D001961 ORTHO05D002286 2.7e-10 68.9 59 55.9
CAN.G628.49 Capsicum annuum HOM05D001961 ORTHO05D002286 3.5e-10 68.6 59 57.6
QL10p014874 Quercus lobata HOM05D001961 ORTHO05D002286 4.6e-10 68.2 59 55.9
Sopen06g027420 Solanum pennellii HOM05D001961 ORTHO05D002286 4.6e-10 68.2 59 57.6
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 4.6e-10 68.2 60 56.7
Lj5C117T8 Lonicera japonica HOM05D001961 ORTHO05D002286 6.0e-10 67.8 59 57.6
Lsat_1_v5_gn_1_11560 Lactuca sativa HOM05D001961 ORTHO05D002286 7.8e-10 67.4 58 58.6
Nitab4.5_0004478g0040 Nicotiana tabacum HOM05D001961 ORTHO05D002286 7.8e-10 67.4 59 55.9
Nitab4.5_0007282g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 7.8e-10 67.4 59 55.9
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 1.0e-09 67.0 60 56.7
Potri.015G066500 Populus trichocarpa HOM05D001961 ORTHO05D002286 1.7e-09 66.2 54 59.3
Manes.06G097300 Manihot esculenta HOM05D001961 ORTHO05D002286 2.3e-09 65.9 55 58.2
Oeu039544.2 Olea europaea HOM05D001961 ORTHO05D002286 2.3e-09 65.9 58 55.2
Solyc06g071120.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 2.3e-09 65.9 59 55.9
SGA_v2.0_scaffold7G04090 Striga asiatica HOM05D001961 ORTHO05D002286 2.3e-09 65.9 58 58.6
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 3.0e-09 65.5 59 54.2
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 3.0e-09 65.5 59 55.9
Actinidia37665 Actinidia chinensis HOM05D001961 ORTHO05D002286 3.9e-09 65.1 60 46.7
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 3.9e-09 65.1 59 55.9
Carub.0005s1403 Capsella rubella HOM05D001961 ORTHO05D002286 3.9e-09 65.1 59 54.2
Carub.0005s1404 Capsella rubella HOM05D001961 ORTHO05D002286 3.9e-09 65.1 59 55.9
Sp5g14050 Schrenkiella parvula HOM05D001961 ORTHO05D002286 3.9e-09 65.1 69 52.2
Lsat_1_v5_gn_5_18460 Lactuca sativa HOM05D001961 ORTHO05D002286 5.0e-09 64.7 59 52.5
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 5.0e-09 64.7 59 54.2
ClCG06G016460 Citrullus lanatus HOM05D001961 ORTHO05D002286 6.6e-09 64.3 59 55.9
Migut.I00114 Erythranthe guttata HOM05D001961 ORTHO05D002286 6.6e-09 64.3 57 54.4
HanXRQChr08g0236941 Helianthus annuus HOM05D001961 ORTHO05D002286 6.6e-09 64.3 59 52.5
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 6.6e-09 64.3 59 54.2
Sabra15G0091600 Salix brachista HOM05D001961 ORTHO05D002286 6.6e-09 64.3 54 57.4
AL5G27220 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 8.6e-09 63.9 59 54.2
CARHR156620 Cardamine hirsuta HOM05D001961 ORTHO05D002286 8.6e-09 63.9 59 52.5
Lj9C457G12 Lonicera japonica HOM05D001961 ORTHO05D002286 8.6e-09 63.9 64 56.2
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 8.6e-09 63.9 59 54.2
SGA_v2.0_scaffold114G31883 Striga asiatica HOM05D001961 ORTHO05D002286 8.6e-09 63.9 57 57.9
AL5G27230 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 1.1e-08 63.5 59 54.2
PGSC0003DMG400033067 Solanum tuberosum HOM05D001961 ORTHO05D002286 1.1e-08 63.5 59 54.2
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 1.5e-08 63.2 59 52.5
DCAR_021541 Daucus carota HOM05D001961 ORTHO05D002286 1.5e-08 63.2 58 51.7
SalBow5G1786 Salvia bowleyana HOM05D001961 ORTHO05D002286 1.5e-08 63.2 80 43.8
Sed0025522 Sechium edule HOM05D001961 ORTHO05D002286 1.5e-08 63.2 58 51.7
Hund09373 Selenicereus undatus HOM05D001961 ORTHO05D002286 1.5e-08 63.2 60 53.3
AT3G47910 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 2.5e-08 62.4 59 52.5
Lalb_Chr13g0298141 Lupinus albus HOM05D001961 ORTHO05D002286 2.5e-08 62.4 59 52.5
Thhalv10010060m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 3.3e-08 62.0 59 50.8
Phvul.003G194200 Phaseolus vulgaris HOM05D001961 ORTHO05D002286 3.3e-08 62.0 60 48.3
Glyma.17G095800 Glycine max HOM05D001961 ORTHO05D002286 4.3e-08 61.6 59 50.8
VMungo1215G0372 Vigna mungo HOM05D001961 ORTHO05D002286 4.3e-08 61.6 60 48.3
Glyma.05G031000 Glycine max HOM05D001961 ORTHO05D002286 5.6e-08 61.2 59 49.2
Hma1.2p1_0002F.1_g003390 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 5.6e-08 61.2 47 61.7
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 5.6e-08 61.2 54 55.6
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 9.5e-08 60.5 59 49.2
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.2e-07 60.1 59 49.2
Lj4g0028007 Lotus japonicus HOM05D001961 ORTHO05D002286 1.2e-07 60.1 59 50.8
unitig_744.g24389 Utricularia gibba HOM05D001961 ORTHO05D002286 1.2e-07 60.1 56 48.2
Sp5g14040 Schrenkiella parvula HOM05D001961 ORTHO05D002286 1.6e-07 59.7 59 52.5
Aa31LG4G16560 Aethionema arabicum HOM05D001961 ORTHO05D002286 2.1e-07 59.3 60 50.0
Lj1g0021908 Lotus japonicus HOM05D001961 ORTHO05D002286 3.6e-07 58.5 59 44.1
Lalb_Chr12g0201211 Lupinus albus HOM05D001961 ORTHO05D002286 3.6e-07 58.5 59 50.8
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 6.2e-07 57.8 59 49.2
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 6.2e-07 57.8 59 52.5
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 6.2e-07 57.8 59 52.5
CDE07G1845 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 8.0e-07 57.4 56 50.0
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 8.0e-07 57.4 59 52.5
Aqoxy3G03236 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.1e-06 57.0 60 45.0
A06p19710 Brassica napus HOM05D001961 ORTHO05D002286 1.4e-06 56.6 58 46.6
BraA06t25050Z Brassica rapa HOM05D001961 ORTHO05D002286 1.4e-06 56.6 58 46.6
DCAR_026083 Daucus carota HOM05D001961 ORTHO05D002286 1.4e-06 56.6 57 49.1
CANSAT80G1878 Cannabis sativa HOM05D001961 ORTHO05D002286 1.8e-06 56.2 54 50.0
Ca_21858_v3 Cicer arietinum L. HOM05D001961 ORTHO05D002286 1.8e-06 56.2 58 44.8
TAR622G0827 Trochodendron aralioides HOM05D001961 ORTHO05D002286 1.8e-06 56.2 65 44.6
arahy.Tifrunner.gnm1.ann1.DV6TYS Arachis hypogaea HOM05D001961 ORTHO05D002286 2.3e-06 55.8 59 45.8
arahy.Tifrunner.gnm1.ann1.LMB17M Arachis hypogaea HOM05D001961 ORTHO05D002286 2.3e-06 55.8 59 45.8
Hma1.2p1_0104F.1_g050400 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 2.3e-06 55.8 48 54.2
PSO161G0075 Papaver somniferum HOM05D001961 ORTHO05D002286 2.3e-06 55.8 60 50.0
BcaC01g01759 Brassica carinata HOM05D001961 ORTHO05D002286 4.0e-06 55.1 58 46.6
A06p19750 Brassica napus HOM05D001961 ORTHO05D002286 4.0e-06 55.1 58 44.8
C03p72190 Brassica napus HOM05D001961 ORTHO05D002286 4.0e-06 55.1 58 46.6
BolC3t19515H Brassica oleracea HOM05D001961 ORTHO05D002286 4.0e-06 55.1 58 46.6
BraA06t25054Z Brassica rapa HOM05D001961 ORTHO05D002286 4.0e-06 55.1 58 44.8
Migut.I00115 Erythranthe guttata HOM05D001961 ORTHO05D002286 4.0e-06 55.1 57 47.4
Aa31LG11G1000 Aethionema arabicum HOM05D001961 ORTHO05D002286 5.2e-06 54.7 60 43.3
BcaB05g23091 Brassica carinata HOM05D001961 ORTHO05D002286 5.2e-06 54.7 59 45.8
PSO210G7105 Papaver somniferum HOM05D001961 ORTHO05D002286 5.2e-06 54.7 60 53.3
PGR083G2262 Punica granatum HOM05D001961 ORTHO05D002286 5.2e-06 54.7 59 47.5
PSO210G2491 Papaver somniferum HOM05D001961 ORTHO05D002286 6.8e-06 54.3 60 53.3
PSO478G4671 Papaver somniferum HOM05D001961 ORTHO05D002286 6.8e-06 54.3 60 48.3


User provided reference genes

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