Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.8e-171 605.9 324 100.0
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.5e-120 434.9 274 83.9
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.0e-118 429.1 320 71.6
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.3e-116 423.7 322 68.6
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.5e-93 347.1 279 62.4
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.7e-92 343.6 275 59.6
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.8e-92 342.8 276 58.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 8.3e-92 341.3 265 61.5
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 2.4e-91 339.7 262 60.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.4e-91 339.7 264 59.8
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.1e-91 339.0 279 58.4
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.5e-90 335.9 284 58.1
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 6.6e-89 331.6 276 59.8
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.6e-89 331.3 283 58.0
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.6e-89 331.3 283 58.0
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 8.6e-89 331.3 285 57.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.9e-88 330.1 321 55.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 4.3e-88 328.9 267 60.7
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 5.6e-88 328.6 268 58.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 5.6e-88 328.6 268 59.0
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.6e-87 327.0 262 58.4
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.6e-87 327.0 278 59.4
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.8e-87 326.2 315 53.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 3.6e-87 325.9 294 56.8
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 4.7e-87 325.5 293 54.9
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 6.1e-87 325.1 280 59.6
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.4e-86 323.9 318 52.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.8e-86 323.6 289 55.4
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.8e-86 323.6 281 57.7
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.3e-86 323.2 274 56.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 4.0e-86 322.4 321 52.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 5.2e-86 322.0 278 57.9
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.2e-86 322.0 264 58.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 5.2e-86 322.0 316 52.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 6.8e-86 321.6 289 56.1
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.5e-85 320.5 275 54.9
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.5e-85 320.5 275 57.1
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.0e-85 320.1 265 58.1
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 3.4e-85 319.3 274 56.2
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.4e-85 318.9 280 59.3
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 4.4e-85 318.9 268 57.5
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 5.8e-85 318.5 264 59.5
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 9.8e-85 317.8 267 56.6
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.3e-84 317.4 316 52.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.3e-84 317.4 320 50.3
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.3e-84 317.4 286 55.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.7e-84 317.0 265 58.1
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.7e-84 317.0 264 58.7
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.2e-84 316.6 283 57.6
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.2e-84 316.6 280 54.6
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.9e-84 316.2 280 53.9
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 6.4e-84 315.1 262 56.9
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.1e-83 314.3 267 55.4
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.4e-83 313.2 279 56.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 4.1e-83 312.4 267 55.1
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 5.4e-83 312.0 315 49.8
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 7.0e-83 311.6 297 51.2
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 7.0e-83 311.6 272 56.6
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.2e-82 310.8 286 55.6
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.0e-82 310.1 265 55.1
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.3e-81 306.6 277 53.1
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.0e-81 306.2 280 50.0
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 4.3e-80 302.4 270 56.3
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 4.3e-80 302.4 274 53.3
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 9.5e-80 301.2 271 55.4
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.2e-79 300.8 264 54.9
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.2e-79 300.8 264 55.3
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.6e-79 300.4 270 55.6
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.6e-79 300.4 274 54.4
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.1e-79 300.1 269 56.1
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.1e-79 300.1 318 49.7
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.8e-79 299.7 275 51.6
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 4.7e-79 298.9 275 53.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.0e-79 298.1 296 53.0
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 8.0e-79 298.1 303 51.5
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.1e-78 297.7 269 54.3
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.1e-78 297.7 268 54.5
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.1e-78 297.7 270 54.4
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.8e-78 297.0 269 55.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.8e-78 297.0 277 50.9
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.8e-78 297.0 284 50.0
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 3.1e-78 296.2 264 55.3
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 6.8e-78 295.0 277 50.5
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 6.8e-78 295.0 279 54.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 8.9e-78 294.7 268 53.0
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 8.9e-78 294.7 264 54.9
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 8.9e-78 294.7 272 53.3
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.5e-77 293.9 279 50.2
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 7.5e-77 291.6 291 49.5
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.7e-76 290.4 281 51.2
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 8.3e-76 288.1 271 53.5
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.1e-75 285.8 271 53.1
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 9.2e-75 284.6 282 51.4
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-74 283.9 285 50.2
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 3.5e-74 282.7 285 50.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.9e-73 279.3 304 48.4
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.5e-72 276.6 248 52.4
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 4.3e-72 275.8 268 53.0
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 4.3e-72 275.8 213 62.9
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.8e-71 273.1 265 50.2
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.8e-69 265.4 298 45.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 7.6e-69 265.0 289 46.7
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.1e-67 258.5 286 46.2
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.2e-66 257.7 301 43.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.2e-66 257.7 287 44.6
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.7e-66 256.5 276 47.8
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.0e-65 254.6 173 75.1
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.0e-65 253.1 291 46.7
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 5.1e-65 252.3 283 44.2
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.5e-64 250.8 282 42.9
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.9e-64 250.4 283 43.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.9e-64 250.4 267 46.8
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.7e-63 245.7 277 47.7
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 8.1e-63 245.0 264 48.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.1e-62 244.6 261 47.1
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-61 241.1 196 59.2
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-61 241.1 196 59.2
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.0e-61 240.4 198 55.6
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.6e-61 240.0 276 48.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.6e-61 238.4 279 45.9
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.6e-58 230.7 304 44.7
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.7e-58 229.9 255 45.1
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.0e-57 228.0 195 56.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.5e-56 224.2 197 57.4
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.3e-56 222.6 272 47.1
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 9.6e-56 221.5 231 45.9
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.1e-55 220.3 282 43.3
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 4.4e-53 212.6 257 42.4
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 3.8e-52 209.5 234 44.4
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.1e-47 193.7 261 40.2
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 8.1e-47 191.8 293 38.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.4e-45 186.4 258 38.0
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 4.5e-45 186.0 266 39.1
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-43 181.0 267 37.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 7.1e-43 178.7 256 39.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.3e-41 173.7 175 49.7
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.1e-30 136.3 199 38.2
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 3.2e-27 126.7 97 60.8
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-18 96.3 88 54.5
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-18 96.3 88 54.5
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.1e-18 95.9 112 45.5
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.9e-18 95.5 195 31.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 9.7e-16 88.6 128 39.1
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 6.5e-12 75.9 90 37.8
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.1e-11 75.1 80 47.5
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.5e-11 73.9 83 42.2
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 3.2e-11 73.6 260 25.0
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.7e-10 69.7 195 27.7
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.5e-08 64.7 199 26.6


User provided reference genes

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