Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g120310 Amaranthus hybridus HOM05D000038 ORTHO05D061609 1.2e-32 142.5 68 100.0
Ah.13g076320 Amaranthus hybridus HOM05D000038 ORTHO05D006286 1.2e-21 105.9 56 89.3
AUR62026007 Chenopodium quinoa HOM05D000038 ORTHO05D006286 1.1e-14 82.8 59 62.7
EL10Ac3g07032 Beta vulgaris HOM05D000038 ORTHO05D006286 1.9e-14 82.0 50 74.0
AUR62024412 Chenopodium quinoa HOM05D000038 ORTHO05D006286 2.5e-14 81.6 59 62.7
Haze_19898 Corylus avellana HOM05D000038 ORTHO05D006286 2.6e-11 71.6 56 57.1
Duzib093G1807 Durio zibethinus HOM05D000038 ORTHO05D006286 5.7e-11 70.5 50 60.0
QL03p033980 Quercus lobata HOM05D000038 ORTHO05D006286 7.5e-11 70.1 50 62.0
QL07p021167 Quercus lobata HOM05D000038 ORTHO05D006286 7.5e-11 70.1 50 62.0
Duzib128G0722 Durio zibethinus HOM05D000038 ORTHO05D006286 2.2e-10 68.6 50 60.0
Gohir.A02G108501 Gossypium hirsutum HOM05D000038 ORTHO05D006286 1.4e-09 65.9 50 54.0
Gorai.003G093500 Gossypium raimondii HOM05D000038 ORTHO05D006286 1.4e-09 65.9 50 54.0
TWI53G0669 Tripterygium wilfordii HOM05D000038 ORTHO05D006286 1.4e-09 65.9 52 53.8
CANSAT80G2709 Cannabis sativa HOM05D000038 ORTHO05D006286 1.8e-09 65.5 56 51.8
Nn2g15362 Nelumbo nucifera HOM05D000038 ORTHO05D006286 3.1e-09 64.7 54 51.9
Thecc.05G160200 Theobroma cacao HOM05D000038 ORTHO05D006286 3.1e-09 64.7 50 52.0
Ciclev10004371m.g Citrus clementina HOM05D000038 ORTHO05D006286 5.4e-09 63.9 49 59.2
Gohir.D03G067000 Gossypium hirsutum HOM05D000038 ORTHO05D006286 5.4e-09 63.9 50 52.0
CSS0023663 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D006286 9.1e-09 63.2 52 53.8
Potri.006G053700 Populus trichocarpa HOM05D000038 ORTHO05D006286 9.1e-09 63.2 52 53.8
PGR142G1058 Punica granatum HOM05D000038 ORTHO05D006286 1.2e-08 62.8 50 58.0
Sabra06G0038100 Salix brachista HOM05D000038 ORTHO05D006286 1.2e-08 62.8 52 55.8
Cpa.g.sc92.26 Carica papaya HOM05D000038 ORTHO05D006286 1.6e-08 62.4 50 54.0
Cc06_g16950 Coffea canephora HOM05D000038 ORTHO05D006286 2.7e-08 61.6 50 56.0
RcHm_v2.0_Chr2g0126871 Rosa chinensis HOM05D000038 ORTHO05D006286 2.7e-08 61.6 54 55.6
TAR633G0714 Trochodendron aralioides HOM05D000038 ORTHO05D006286 2.7e-08 61.6 52 53.8
CSS0019984 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D006286 3.5e-08 61.2 52 51.9
CSS0040303 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D006286 3.5e-08 61.2 52 51.9
Lju124C36T6 Lonicera japonica HOM05D000038 ORTHO05D006286 3.5e-08 61.2 50 60.0
TWI74G0995 Tripterygium wilfordii HOM05D000038 ORTHO05D006286 3.5e-08 61.2 52 51.9
Ca_08474_v3 Cicer arietinum L. HOM05D000038 ORTHO05D006286 4.5e-08 60.8 50 56.0
Rhsim03G0017800 Rhododendron simsii HOM05D000038 ORTHO05D006286 4.5e-08 60.8 50 58.0
TPR.G31155 Trifolium pratense HOM05D000038 ORTHO05D006286 4.5e-08 60.8 50 56.0
TAR636G0407 Trochodendron aralioides HOM05D000038 ORTHO05D006286 4.5e-08 60.8 54 48.1
CiPaw.09G036100 Carya illinoinensis HOM05D000038 ORTHO05D006286 5.9e-08 60.5 50 54.0
FvH4_6g26380 Fragaria vesca HOM05D000038 ORTHO05D006286 5.9e-08 60.5 54 55.6
vmacro22368 Vaccinium macrocarpon HOM05D000038 ORTHO05D006286 5.9e-08 60.5 51 56.9
Lj1g0008221 Lotus japonicus HOM05D000038 ORTHO05D006286 7.7e-08 60.1 50 54.0
Potri.016G053800 Populus trichocarpa HOM05D000038 ORTHO05D006286 7.7e-08 60.1 50 56.0
VMungo0720G2583 Vigna mungo HOM05D000038 ORTHO05D006286 7.7e-08 60.1 50 52.0
FAN02G4111 Fragaria x ananassa HOM05D000038 ORTHO05D006286 1.0e-07 59.7 54 55.6
FAN09G1729 Fragaria x ananassa HOM05D000038 ORTHO05D006286 1.0e-07 59.7 54 55.6
Manes.08G048900 Manihot esculenta HOM05D000038 ORTHO05D006286 1.0e-07 59.7 52 50.0
Nn7g36209 Nelumbo nucifera HOM05D000038 ORTHO05D006286 1.0e-07 59.7 54 46.3
Sc19g0006750 Simmondsia chinensis HOM05D000038 ORTHO05D006286 1.0e-07 59.7 50 50.0
Eucgr.A02383 Eucalyptus grandis HOM05D000038 ORTHO05D006286 1.3e-07 59.3 50 54.0
MBI04_g40113_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D006286 1.3e-07 59.3 53 50.9
AL4G40220 Arabidopsis lyrata HOM05D000038 ORTHO05D006286 1.7e-07 58.9 57 47.4
Lalb_Chr25g0287391 Lupinus albus HOM05D000038 ORTHO05D006286 1.7e-07 58.9 50 52.0
Sabra16G0056900 Salix brachista HOM05D000038 ORTHO05D006286 2.3e-07 58.5 50 56.0
Actinidia09351 Actinidia chinensis HOM05D000038 ORTHO05D006286 2.9e-07 58.2 50 56.0
Actinidia24525 Actinidia chinensis HOM05D000038 ORTHO05D006286 2.9e-07 58.2 50 56.0
Thhalv10016288m.g Eutrema salsugineum HOM05D000038 ORTHO05D006286 2.9e-07 58.2 49 51.0
Sp4g24160 Schrenkiella parvula HOM05D000038 ORTHO05D006286 2.9e-07 58.2 49 51.0
Dinv01667 Davidia involucrata HOM05D000038 ORTHO05D006286 5.0e-07 57.4 54 50.0
Glyma.02G182200 Glycine max HOM05D000038 ORTHO05D006286 5.0e-07 57.4 50 48.0
Glyma.03G138400 Glycine max HOM05D000038 ORTHO05D006286 5.0e-07 57.4 50 54.0
A04p31880 Brassica napus HOM05D000038 ORTHO05D006286 8.6e-07 56.6 49 51.0
BraA04t18646Z Brassica rapa HOM05D000038 ORTHO05D006286 8.6e-07 56.6 49 51.0
AT2G41890 Arabidopsis thaliana HOM05D000038 ORTHO05D006286 1.1e-06 56.2 49 53.1
BcaC02g07280 Brassica carinata HOM05D000038 ORTHO05D006286 1.1e-06 56.2 49 51.0
C04p69330 Brassica napus HOM05D000038 ORTHO05D006286 1.1e-06 56.2 49 51.0
BolC4t28434H Brassica oleracea HOM05D000038 ORTHO05D006286 1.1e-06 56.2 49 51.0
Medtr7g092050 Medicago truncatula HOM05D000038 ORTHO05D006286 1.1e-06 56.2 50 56.0
THA.LOC104802220 Tarenaya hassleriana HOM05D000038 ORTHO05D006286 1.1e-06 56.2 52 48.1
Prupe.7G065700 Prunus persica HOM05D000038 ORTHO05D006286 1.5e-06 55.8 54 50.0
BcaB06g29215 Brassica carinata HOM05D000038 ORTHO05D006286 1.9e-06 55.5 48 52.1
Dinv18069 Davidia involucrata HOM05D000038 ORTHO05D006286 1.9e-06 55.5 49 53.1
Glyma.10G100600 Glycine max HOM05D000038 ORTHO05D006286 1.9e-06 55.5 50 46.0
Carub.0004s2420 Capsella rubella HOM05D000038 ORTHO05D006286 2.5e-06 55.1 49 51.0
CARHR136980 Cardamine hirsuta HOM05D000038 ORTHO05D006286 4.2e-06 54.3 49 49.0
ECA236G1790 Erigeron canadensis HOM05D000038 ORTHO05D006286 4.2e-06 54.3 54 46.3
Psat3g021880 Pisum sativum HOM05D000038 ORTHO05D006286 7.2e-06 53.5 43 55.8


User provided reference genes

Program Settings