Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 2.4e-147 525.4 256 100.0
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.5e-112 409.8 257 79.0
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 2.2e-111 406.0 257 79.0
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 5.9e-93 344.7 247 68.8
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 2.5e-91 339.3 253 64.0
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 1.2e-90 337.0 253 66.0
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 1.2e-90 337.0 255 63.9
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.2e-90 337.0 254 63.4
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 1.6e-90 336.7 248 71.4
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 2.3e-89 332.8 250 66.8
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 2.3e-89 332.8 254 64.6
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 2.0e-88 329.7 233 69.1
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 5.7e-88 328.2 235 68.5
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 5.7e-88 328.2 235 68.9
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 5.7e-88 328.2 232 68.1
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 7.5e-88 327.8 232 69.4
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.2e-87 326.2 238 66.4
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 2.8e-87 325.9 248 64.1
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 2.4e-86 322.8 232 66.4
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 3.1e-86 322.4 240 65.0
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 7.0e-86 321.2 238 65.5
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 9.2e-86 320.9 248 64.9
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.2e-85 320.5 235 67.2
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 2.0e-85 319.7 235 66.8
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 4.5e-85 318.5 234 67.1
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 5.9e-85 318.2 244 65.6
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 5.9e-85 318.2 262 61.8
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 7.8e-85 317.8 244 65.6
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.0e-84 317.4 244 64.8
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 1.0e-84 317.4 279 59.5
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 1.7e-84 316.6 246 64.6
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 1.7e-84 316.6 231 67.1
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 6.6e-84 314.7 248 63.3
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 6.6e-84 314.7 233 66.5
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 6.6e-84 314.7 246 65.4
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 1.9e-83 313.2 247 63.2
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 3.3e-83 312.4 237 64.6
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 3.3e-83 312.4 244 65.2
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 7.3e-83 311.2 251 62.2
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 7.3e-83 311.2 229 67.7
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.2e-82 310.5 237 65.0
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 3.6e-82 308.9 236 62.3
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 3.6e-82 308.9 241 63.9
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 1.0e-81 307.4 252 62.7
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 1.4e-81 307.0 228 67.5
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 2.6e-80 302.8 245 63.7
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 2.6e-80 302.8 241 62.7
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 9.8e-80 300.8 236 64.8
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 9.8e-80 300.8 231 64.1
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 1.3e-79 300.4 234 63.7
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 1.3e-79 300.4 241 60.6
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 1.3e-79 300.4 243 63.0
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 3.7e-79 298.9 230 63.9
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 3.7e-79 298.9 230 64.3
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 3.7e-79 298.9 229 62.4
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 6.4e-79 298.1 235 63.4
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 1.1e-78 297.4 243 62.6
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 1.4e-78 297.0 249 62.7
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 2.4e-78 296.2 246 63.4
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 2.4e-78 296.2 246 63.4
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 5.4e-78 295.0 233 62.7
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 9.2e-78 294.3 245 61.2
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.2e-77 293.9 243 62.1
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 3.5e-77 292.4 249 61.4
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 3.5e-77 292.4 249 61.4
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 3.5e-77 292.4 271 56.1
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 3.5e-77 292.4 232 63.8
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 4.6e-77 292.0 245 61.6
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.6e-77 292.0 272 56.2
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 4.6e-77 292.0 228 64.0
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 6.0e-77 291.6 245 62.0
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 6.0e-77 291.6 242 62.4
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 7.8e-77 291.2 270 55.6
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.0e-76 290.8 233 61.8
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 2.3e-76 289.7 234 60.3
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 3.9e-76 288.9 247 60.3
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 6.6e-76 288.1 268 56.7
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 1.5e-75 287.0 279 54.5
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.5e-75 286.2 271 55.0
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 9.5e-75 284.3 234 62.4
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 1.2e-74 283.9 259 56.0
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.1e-73 280.8 248 60.1
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 3.1e-73 279.3 235 58.7
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 1.2e-72 277.3 237 58.6
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 1.5e-72 276.9 235 60.0
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 4.4e-72 275.4 224 61.2
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 4.4e-72 275.4 237 58.6
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 1.3e-71 273.9 240 59.2
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 1.7e-71 273.5 244 56.1
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 2.2e-71 273.1 266 55.6
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 4.1e-70 268.9 294 49.7
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 5.4e-70 268.5 238 55.0
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 2.1e-69 266.5 286 50.3
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 2.8e-66 256.1 265 53.6
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 9.9e-64 247.7 219 58.0
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 3.7e-63 245.7 176 66.5
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 1.9e-59 233.4 175 65.1
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 5.6e-59 231.9 237 54.0
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 3.2e-54 216.1 223 54.7
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 1.7e-52 210.3 271 41.7
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 4.7e-50 202.2 268 41.8
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 6.6e-44 181.8 259 44.0
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 2.8e-42 176.4 134 62.7
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 9.0e-41 171.4 172 49.4
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 4.5e-40 169.1 234 46.2
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 3.8e-39 166.0 125 60.0
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 6.4e-39 165.2 232 42.2
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 1.4e-30 137.5 130 56.9
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 3.2e-30 136.3 121 62.0
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.8e-25 120.6 148 47.3
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 2.4e-17 93.6 140 33.6
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 5.3e-17 92.4 105 50.5
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 1.4e-14 84.3 115 47.0
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.3e-07 61.2 137 34.3
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 6.5e-07 58.9 37 75.7
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.5e-06 57.0 48 52.1


User provided reference genes

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