Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 0.0e+00 1753.4 997 100.0
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1206.0 1572 51.7
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 1152.1 1572 48.3
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1147.5 1574 48.2
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1146.3 1587 47.6
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1144.8 1574 48.0
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 1142.5 1574 48.0
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 1136.7 1586 47.5
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1134.8 1576 49.1
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1133.6 1534 48.6
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 1133.6 1594 47.1
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1130.9 1433 49.2
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1127.9 1573 49.0
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1124.0 1573 48.8
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 0.0e+00 1123.2 1586 49.4
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1118.6 1586 48.9
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1118.2 1586 47.3
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1110.9 1586 47.0
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 1109.4 1590 48.6
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1102.8 1581 47.7
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 1100.9 1586 45.1
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1099.3 1581 47.7
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 1097.0 1572 46.5
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 1092.0 1585 47.6
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1092.0 1677 44.2
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 1090.5 1588 44.6
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 1089.7 1614 45.7
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 1082.8 1587 44.9
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 1081.6 1573 46.5
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 1081.2 1572 45.5
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 0.0e+00 1080.9 1686 43.5
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 1079.3 1574 44.6
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 1077.0 1586 45.6
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 1077.0 1567 46.2
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 1075.8 1574 44.6
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 1075.1 1617 44.7
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1075.1 1540 46.0
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1075.1 1540 46.0
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1075.1 720 81.4
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1075.1 720 81.4
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 6.8e-312 1074.7 1605 45.4
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 6.8e-312 1073.5 1586 44.6
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 1.4e-311 1073.2 1579 45.5
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 3.0e-310 1068.5 1586 47.6
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 5.2e-310 1067.8 1586 45.8
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 6.8e-310 1067.4 1586 47.9
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.0e-309 1065.8 1586 45.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.6e-309 1065.4 1586 45.7
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 3.3e-309 1065.1 1589 45.8
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 7.4e-309 1063.9 1605 46.4
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 1.3e-308 1063.1 1574 44.6
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 2.2e-308 1062.4 810 73.2
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.8e-307 1059.3 1585 44.8
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 4.1e-307 1058.1 810 70.9
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.6e-306 1055.4 1586 45.5
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 1.7e-305 1052.7 1587 44.4
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 3.2e-304 1048.5 1586 47.0
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 1.6e-303 1046.2 1691 42.8
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 8.0e-303 1043.9 1598 46.5
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 7.0e-299 1030.8 810 75.6
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 3.8e-297 1025.0 1589 43.5
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 6.5e-297 1024.2 810 70.1
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.2e-293 1013.4 808 69.2
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 1.5e-293 1013.1 1584 45.3
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 4.4e-293 1011.5 718 78.3
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 4.4e-293 1011.5 810 71.6
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 7.5e-293 1010.7 1587 43.5
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.8e-292 1008.8 810 70.2
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.6e-290 1003.0 720 80.0
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 6.6e-289 997.7 810 68.4
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 2.6e-285 985.7 1572 44.8
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 3.7e-276 955.3 875 62.9
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 1.2e-274 950.3 1575 42.1
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 2.7e-274 949.1 1572 44.0
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 8.6e-273 944.1 1563 42.2
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 7.5e-269 931.0 1572 43.2
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 2.2e-268 929.5 1539 43.4
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 4.9e-268 928.3 1622 40.5
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 1.9e-267 926.4 1573 42.9
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 5.4e-267 924.9 1573 42.8
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 1.6e-266 923.3 1576 42.4
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 1.3e-265 920.2 1573 42.8
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.7e-265 919.8 1572 42.6
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 5.1e-265 918.3 1591 42.4
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 2.8e-263 912.5 720 68.5
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 6.2e-263 911.4 1598 42.2
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 3.7e-260 902.1 1589 40.8
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 3.5e-258 895.6 1590 40.7
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 3.0e-257 892.5 1575 42.0
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 3.3e-256 889.0 1572 41.8
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 4.3e-256 888.6 721 67.0
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 8.9e-254 880.9 1593 41.1
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 3.5e-250 869.0 722 70.5
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 1.6e-247 860.1 720 71.4
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 8.4e-244 847.8 1477 41.4
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 1.6e-242 843.6 720 65.0
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 3.3e-240 835.9 720 70.3
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 8.1e-231 804.7 723 60.2
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 1.9e-227 793.5 1581 38.6
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 3.9e-225 785.8 816 56.2
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 5.1e-225 785.4 718 61.0
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 3.6e-210 736.1 709 61.6
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 8.0e-194 681.8 1299 37.6
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 9.8e-184 648.3 577 70.5
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 1.7e-183 647.5 522 71.3
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.8e-172 609.8 622 59.0
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 1.9e-171 607.4 722 53.0
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 2.6e-168 597.0 737 46.4
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.3e-167 594.7 1262 35.8
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 1.5e-160 571.2 728 44.9
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.3e-140 505.0 658 53.0
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 2.1e-133 481.1 749 40.6
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 8.7e-132 475.7 332 76.8
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 8.4e-127 459.1 580 54.7
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 1.1e-113 415.6 432 61.1
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 9.6e-107 392.5 295 68.1
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 2.0e-96 358.2 375 56.5
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.3e-90 339.0 279 64.9
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.3e-90 339.0 279 64.9
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 1.4e-73 282.3 924 29.1
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 9.1e-73 279.6 279 54.5
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.2e-69 269.2 295 51.5
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 1.6e-69 268.9 291 51.9
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 8.0e-69 266.5 292 53.4
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 4.0e-68 264.2 294 51.4
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 2.9e-63 248.1 278 50.4
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.3e-60 238.4 285 52.6
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.2e-59 236.1 147 83.0
Nitab4.5_0019712g0010 Nicotiana tabacum HOM05D003193 ORTHO05D004924 8.3e-58 229.9 122 93.4
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 9.2e-57 226.5 214 57.9
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 1.4e-52 212.6 269 47.2
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 9.5e-46 189.9 267 46.8
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 1.3e-42 179.5 119 79.8
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 9.2e-41 173.3 180 53.9
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.3e-39 168.7 192 55.7
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 2.8e-37 161.8 222 45.0
MD04G1233900 Malus domestica HOM05D003193 ORTHO05D004924 2.2e-26 125.6 101 60.4
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 2.8e-21 108.6 236 35.6
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 1.8e-20 105.9 83 61.4
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.2e-18 99.0 57 93.0
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 1.9e-17 95.9 88 54.5
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 6.0e-16 90.9 54 77.8
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 3.9e-15 88.2 145 49.0
SEGI_11076 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 8.7e-15 87.0 96 42.7
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.8e-13 81.3 64 68.8
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 4.8e-13 81.3 125 37.6
Actinidia26098 Actinidia chinensis HOM05D003193 ORTHO05D026302 1.8e-12 79.3 134 47.0
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 1.3e-10 73.2 85 43.5
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 5.4e-09 67.8 59 57.6
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 2.1e-08 65.9 60 65.0
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 2.7e-08 65.5 60 55.0
Cre14.g615950 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 6.0e-08 64.3 82 43.9
QL03p032673 Quercus lobata HOM05D003193 ORTHO05D337941 6.0e-08 64.3 34 88.2
Zm00001eb208170 Zea mays HOM05D003193 ORTHO05D026302 2.3e-07 62.4 122 35.2
PSO104G0170 Papaver somniferum HOM05D003193 ORTHO05D000001 1.5e-06 59.7 37 70.3
Oeu049759.1 Olea europaea HOM05D000203 ORTHO05D000135 1.9e-06 59.3 85 44.7
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 1.9e-06 59.3 118 33.1
PRCOL_00007280 Prasinoderma coloniale HOM05D000681 ORTHO05D028791 3.3e-06 58.5 93 36.6
Actinidia23236 Actinidia chinensis HOM05D003193 ORTHO05D055714 4.3e-06 58.2 77 51.9


User provided reference genes

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