Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.9e-131 471.9 229 100.0
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 2.8e-110 402.1 230 84.3
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.8e-109 399.4 232 82.3
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.9e-107 392.1 232 81.5
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.5e-100 369.8 235 77.0
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 3.7e-94 348.6 218 77.5
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.4e-93 345.9 233 74.7
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 5.3e-93 344.7 230 74.8
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 6.9e-93 344.4 233 73.0
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.2e-92 343.6 230 74.3
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 2.0e-92 342.8 233 73.0
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.4e-92 342.0 233 73.4
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 3.4e-92 342.0 231 71.9
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.4e-92 342.0 213 77.5
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.5e-92 341.7 231 71.9
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.5e-92 341.7 213 77.5
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.0e-91 340.5 214 77.1
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.7e-91 339.7 219 76.3
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.9e-91 339.0 219 74.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.8e-91 338.6 234 71.4
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.8e-91 338.6 230 72.6
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 5.0e-91 338.2 235 69.4
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.0e-91 338.2 232 71.1
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 6.5e-91 337.8 218 76.1
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 8.5e-91 337.4 231 71.9
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-90 337.0 229 72.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.4e-90 336.7 255 68.2
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-90 336.3 231 71.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.9e-90 336.3 213 76.1
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.5e-90 335.9 219 72.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.5e-90 335.9 219 72.6
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.5e-90 335.9 234 71.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 2.5e-90 335.9 219 74.0
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 3.2e-90 335.5 231 71.0
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 5.5e-90 334.7 218 74.3
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 5.5e-90 334.7 233 72.1
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.2e-89 333.6 219 73.5
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.2e-89 333.6 229 72.1
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-89 333.2 232 70.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.6e-89 333.2 213 77.5
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-89 332.8 231 71.4
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.7e-89 332.4 233 70.4
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 6.1e-89 331.3 219 73.5
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.4e-88 330.1 232 67.7
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-88 330.1 215 74.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.0e-88 328.9 244 69.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.1e-88 328.2 218 73.4
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.1e-88 328.2 246 67.9
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 6.7e-88 327.8 215 74.4
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 6.7e-88 327.8 215 74.4
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 6.7e-88 327.8 232 68.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 8.8e-88 327.4 235 68.9
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 8.8e-88 327.4 219 71.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.5e-87 326.6 225 71.6
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 2.0e-87 326.2 210 73.8
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 3.3e-87 325.5 219 71.7
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.7e-87 324.7 246 66.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 5.7e-87 324.7 219 70.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 7.4e-87 324.3 219 71.7
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 7.4e-87 324.3 216 71.8
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 9.7e-87 323.9 230 70.4
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 9.7e-87 323.9 209 74.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.3e-86 323.6 219 72.1
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.7e-86 323.2 225 70.2
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.7e-86 323.2 225 70.2
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 3.7e-86 322.0 219 71.7
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 3.7e-86 322.0 223 69.5
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 4.8e-86 321.6 230 67.8
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 8.2e-86 320.9 223 69.1
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.1e-85 320.5 219 69.9
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.4e-85 320.1 216 70.8
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.4e-85 319.3 237 67.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 4.1e-85 318.5 209 74.6
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.2e-84 317.0 219 68.5
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.0e-84 316.2 213 71.4
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 4.5e-84 315.1 213 71.4
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 5.9e-84 314.7 219 68.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.0e-83 313.9 234 67.1
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.0e-83 313.9 234 67.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 8.5e-83 310.8 220 69.5
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 5.5e-82 308.1 269 59.1
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 7.2e-82 307.8 219 68.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.6e-81 306.6 210 71.0
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.7e-81 305.8 230 68.3
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 3.6e-81 305.4 220 67.3
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.6e-81 305.4 231 65.8
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.6e-81 305.4 228 67.1
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 6.1e-81 304.7 238 64.3
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 6.1e-81 304.7 217 65.4
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 7.9e-81 304.3 222 69.8
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 5.1e-80 301.6 213 69.5
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 6.7e-80 301.2 230 67.4
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 6.7e-80 301.2 234 64.1
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.5e-79 300.1 219 66.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.0e-79 299.7 230 63.9
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.0e-79 299.7 234 65.8
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.3e-79 298.9 216 68.5
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 5.7e-79 298.1 230 63.5
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 7.4e-79 297.7 213 66.7
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.3e-78 297.0 226 63.3
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.7e-78 296.6 225 64.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.8e-78 295.8 230 63.0
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.8e-78 295.8 228 63.2
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.7e-78 295.4 226 65.0
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.7e-78 295.4 228 63.2
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.8e-78 295.0 233 63.5
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 4.8e-78 295.0 224 64.3
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.1e-77 293.9 225 63.1
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.8e-77 293.1 225 64.4
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 2.4e-77 292.7 213 65.7
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 3.1e-77 292.4 242 62.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.1e-77 292.0 220 61.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.1e-77 292.0 230 61.7
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 5.3e-77 291.6 220 61.8
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 7.0e-77 291.2 228 62.3
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 7.0e-77 291.2 228 62.3
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.2e-76 290.4 230 62.2
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 2.0e-76 289.7 228 62.3
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.0e-75 287.3 230 65.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 6.5e-75 284.6 216 65.3
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.1e-74 283.9 178 75.8
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.9e-74 283.1 210 66.2
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 5.5e-74 281.6 228 61.4
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 2.4e-69 266.2 185 71.4
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-68 263.1 203 66.0
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.0e-68 263.1 235 61.7
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 8.0e-65 251.1 211 61.6
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 2.3e-64 249.6 211 55.9
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.0e-64 249.2 215 60.0
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 4.0e-64 248.8 166 70.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.8e-64 248.1 159 75.5
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 5.3e-61 238.4 212 55.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 9.4e-58 227.6 157 68.8
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.7e-57 226.1 173 66.5
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.0e-56 224.2 179 64.2
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 9.5e-50 201.1 222 46.8
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.6e-49 200.3 213 51.2
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.6e-49 200.3 218 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 8.0e-49 198.0 213 50.7
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.4e-48 197.2 184 57.1
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 4.0e-48 195.7 135 71.9
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.5e-42 177.2 120 67.5
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.2e-39 167.5 99 79.8
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.8e-39 164.5 170 51.8
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 6.4e-38 161.8 201 44.8
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.2e-36 157.5 120 60.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 6.2e-33 145.2 154 51.9
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.4e-32 144.1 90 75.6
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 4.9e-30 135.6 219 38.4
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 3.9e-27 125.9 152 44.1
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.5e-26 124.0 79 73.4
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 4.3e-26 122.5 102 62.7
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 3.2e-21 106.3 87 56.3
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 3.5e-20 102.8 204 31.4
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 6.0e-20 102.1 56 91.1
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.0e-19 101.3 66 74.2
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.7e-19 100.5 80 65.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-17 93.2 70 65.7
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 6.2e-17 92.0 121 40.5
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 8.1e-17 91.7 57 75.4
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-16 89.7 73 63.0
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-15 87.8 73 61.6
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 5.8e-15 85.5 74 59.5
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 2.2e-14 83.6 227 29.1
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.7e-11 73.9 65 61.5
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 1.9e-10 70.5 140 33.6
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-10 70.5 70 51.4
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 9.0e-08 61.6 35 82.9
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.8e-07 58.9 53 58.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 1.3e-06 57.8 43 62.8
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 2.9e-06 56.6 44 63.6


User provided reference genes

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