Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g117430 Amaranthus hybridus HOM05D003563 ORTHO05D005325 2.9e-143 511.9 261 100.0
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 5.8e-128 461.1 261 89.7
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 7.6e-128 460.7 261 90.0
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 4.2e-118 428.3 261 83.5
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 1.2e-117 426.8 279 79.2
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.0e-116 423.7 260 83.5
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.0e-116 423.7 260 82.7
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 1.0e-116 423.7 261 82.8
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 3.9e-116 421.8 261 82.8
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.5e-115 419.9 260 81.5
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 2.5e-115 419.1 261 81.6
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 2.5e-115 419.1 260 82.3
Cc10_g02960 Coffea canephora HOM05D003563 ORTHO05D005325 5.6e-115 417.9 261 82.4
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 5.6e-115 417.9 260 81.2
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 7.3e-115 417.5 261 80.8
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 1.6e-114 416.4 261 78.5
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 2.1e-114 416.0 262 81.3
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 2.8e-114 415.6 261 80.5
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 2.8e-114 415.6 260 82.3
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 3.6e-114 415.2 260 79.6
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 3.6e-114 415.2 260 80.8
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 3.6e-114 415.2 261 80.1
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 6.2e-114 414.5 260 81.5
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 6.2e-114 414.5 261 80.1
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 8.1e-114 414.1 261 80.1
Haze_07269 Corylus avellana HOM05D003563 ORTHO05D005325 1.1e-113 413.7 261 81.6
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.1e-113 413.7 260 80.4
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.1e-113 413.7 260 80.4
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 2.4e-113 412.5 261 79.7
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 3.1e-113 412.1 261 80.1
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 3.1e-113 412.1 256 80.9
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 4.0e-113 411.8 261 79.7
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 5.3e-113 411.4 261 80.8
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 5.3e-113 411.4 269 79.6
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 5.3e-113 411.4 261 81.2
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 6.9e-113 411.0 261 80.8
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 6.9e-113 411.0 261 80.8
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 6.9e-113 411.0 261 80.1
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 6.9e-113 411.0 260 80.0
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 9.0e-113 410.6 260 81.2
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 9.0e-113 410.6 261 78.5
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 1.2e-112 410.2 257 80.9
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 1.2e-112 410.2 261 78.9
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.5e-112 409.8 261 79.3
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 3.4e-112 408.7 260 80.4
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 9.9e-112 407.1 260 80.8
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 9.9e-112 407.1 261 78.2
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 1.7e-111 406.4 261 80.1
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 2.9e-111 405.6 261 79.3
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 3.8e-111 405.2 260 78.5
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 3.8e-111 405.2 258 78.7
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 4.9e-111 404.8 261 77.8
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 6.4e-111 404.4 261 79.3
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 6.4e-111 404.4 261 79.3
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 1.1e-110 403.7 260 78.5
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 1.4e-110 403.3 261 78.2
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 1.9e-110 402.9 257 78.6
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 2.4e-110 402.5 261 78.9
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 2.4e-110 402.5 261 77.0
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 2.4e-110 402.5 261 77.4
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 5.4e-110 401.4 257 78.6
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 5.4e-110 401.4 261 77.8
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 7.1e-110 401.0 261 78.2
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 9.3e-110 400.6 260 78.1
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 9.3e-110 400.6 261 77.4
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 1.2e-109 400.2 260 79.2
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 1.2e-109 400.2 260 78.1
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 2.7e-109 399.1 261 77.4
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 4.6e-109 398.3 261 77.8
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 6.0e-109 397.9 261 77.4
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 6.0e-109 397.9 260 79.2
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 7.9e-109 397.5 260 76.9
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 1.0e-108 397.1 259 76.8
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.3e-108 396.7 261 78.2
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 1.7e-108 396.4 261 75.5
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 2.3e-108 396.0 261 77.0
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 3.0e-108 395.6 260 77.3
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 3.9e-108 395.2 260 77.7
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 5.1e-108 394.8 261 77.0
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 1.5e-107 393.3 261 76.6
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 1.9e-107 392.9 261 76.6
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 2.5e-107 392.5 261 78.9
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 9.6e-107 390.6 261 76.2
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 1.3e-106 390.2 260 75.0
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 1.6e-106 389.8 259 75.3
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 1.6e-106 389.8 262 76.0
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 2.1e-106 389.4 257 75.9
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 2.8e-106 389.0 257 75.9
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 8.1e-106 387.5 260 75.4
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 1.2e-104 383.6 288 70.8
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 2.6e-104 382.5 260 73.8
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.3e-103 380.2 260 73.5
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 2.2e-103 379.4 245 79.6
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 4.9e-103 378.3 256 77.3
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 6.4e-103 377.9 260 75.0
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 1.1e-102 377.1 260 73.1
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 4.2e-102 375.2 260 71.5
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 7.1e-102 374.4 242 77.7
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 2.1e-101 372.9 260 72.7
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 2.7e-101 372.5 242 77.3
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 3.7e-98 362.1 229 79.5
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 8.4e-95 350.9 296 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.4e-94 350.1 255 69.0
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 6.0e-93 344.7 255 68.2
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 3.9e-92 342.0 260 69.2
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 1.1e-91 340.5 255 67.5
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.5e-91 340.1 257 66.5
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 2.5e-91 339.3 298 61.1
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 9.6e-91 337.4 262 66.0
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 9.0e-89 330.9 242 74.0
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 2.0e-88 329.7 254 66.9
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 3.4e-88 328.9 261 67.4
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 4.5e-88 328.6 242 68.6
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.1e-86 323.9 258 63.6
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 7.2e-86 321.2 255 63.9
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 4.6e-85 318.5 199 77.9
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 6.1e-85 318.2 261 63.6
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.8e-84 316.6 260 62.3
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 8.8e-76 287.7 268 57.1
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.2e-71 273.1 279 57.0
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 2.5e-70 269.6 199 70.9
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 2.7e-69 266.2 199 71.4
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 1.6e-56 223.8 261 50.2
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 4.5e-56 222.2 253 50.6
Aqoxy508s001 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 8.5e-55 218.0 138 76.8
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 1.5e-51 207.2 141 72.3
Glyma.06G032451 Glycine max HOM05D003563 ORTHO05D005325 9.8e-51 204.5 137 70.8
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.2e-40 171.0 260 40.8
CSS0021951 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 3.3e-38 162.9 169 57.4
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 2.1e-37 160.2 215 46.0
Duzib041G0434 Durio zibethinus HOM05D003563 ORTHO05D005325 1.8e-33 147.1 110 72.7
PSO541G3367 Papaver somniferum HOM05D003563 ORTHO05D005325 1.8e-33 147.1 136 58.8
Hma1.2p1_0203F.1_g086416 Hydrangea macrophylla HOM05D003563 ORTHO05D025739 3.9e-31 139.4 88 83.0
Actinidia15322 Actinidia chinensis HOM05D003563 ORTHO05D005325 3.6e-29 132.9 100 75.0
QL05p059246 Quercus lobata HOM05D003563 ORTHO05D005325 2.0e-24 117.1 70 75.7
Haze_26669 Corylus avellana HOM05D003563 ORTHO05D005325 1.2e-21 107.8 132 50.0
Gorai.009G203000 Gossypium raimondii HOM05D003563 ORTHO05D034044 3.1e-20 103.2 117 53.0
Gohir.D05G197950 Gossypium hirsutum HOM05D003563 ORTHO05D034044 1.2e-19 101.3 117 52.1
Prupe.3G300000 Prunus persica HOM05D003563 ORTHO05D025739 1.6e-16 90.9 65 70.8
CARHR204890 Cardamine hirsuta HOM05D003563 ORTHO05D034044 4.6e-16 89.4 63 71.4
Oeu024936.1 Olea europaea HOM05D003563 ORTHO05D005325 2.1e-13 80.5 51 74.5
CSS0046775 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 2.8e-13 80.1 50 74.0
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 1.1e-09 68.2 185 32.4
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.9e-09 67.4 185 33.0
Potri.002G262101 Populus trichocarpa HOM05D003169 ORTHO05D003700 2.4e-09 67.0 43 62.8
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 4.1e-09 66.2 185 32.4
GSVIVG01025961001 Vitis vinifera HOM05D003563 ORTHO05D011281 7.1e-09 65.5 55 60.0
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 1.2e-08 64.7 186 31.7
Rhsim08G0102600 Rhododendron simsii HOM05D003563 ORTHO05D339399 1.6e-08 64.3 45 71.1
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 2.1e-08 63.9 185 31.9
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 2.7e-08 63.5 183 31.7
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 4.6e-08 62.8 186 29.6
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 4.6e-08 62.8 185 32.4
Oeu024937.1 Olea europaea HOM05D003563 ORTHO05D290574 7.8e-08 62.0 38 78.9
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 1.3e-07 61.2 183 30.1
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 3.0e-07 60.1 185 31.9
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 3.9e-07 59.7 183 30.1
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 6.6e-07 58.9 186 30.1
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 8.6e-07 58.5 185 29.7
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 8.6e-07 58.5 185 31.9
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 1.1e-06 58.2 186 32.3
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 1.9e-06 57.4 189 29.1
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 1.9e-06 57.4 189 29.1
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 1.9e-06 57.4 189 31.7
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 2.5e-06 57.0 188 31.9
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 2.5e-06 57.0 185 29.7
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 3.3e-06 56.6 183 28.4
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 3.3e-06 56.6 183 28.4
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 5.6e-06 55.8 185 29.2
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 5.6e-06 55.8 185 31.9
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 5.6e-06 55.8 186 30.1
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 7.3e-06 55.5 187 31.0
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 7.3e-06 55.5 186 30.6
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 9.6e-06 55.1 183 29.0
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 9.6e-06 55.1 183 30.1
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 9.6e-06 55.1 186 30.1


User provided reference genes

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