Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.8e-70 268.5 178 100.0
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.2e-53 212.2 178 85.4
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.2e-53 212.2 178 84.8
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.6e-52 208.4 178 83.7
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.5e-50 202.6 178 82.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.2e-47 193.7 178 60.7
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 7.1e-45 184.5 178 77.0
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.3e-43 179.5 171 78.4
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 5.3e-40 168.3 173 62.4
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.3e-40 168.3 173 62.4
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.3e-40 168.3 173 62.4
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 9.0e-40 167.5 164 67.1
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.5e-39 166.8 169 65.7
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.0e-39 166.4 174 63.8
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.0e-39 166.4 174 64.4
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.0e-39 166.4 161 67.7
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-39 166.0 173 62.4
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.4e-39 165.6 174 62.6
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.5e-39 165.2 173 63.0
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 7.6e-39 164.5 165 78.2
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.0e-38 164.1 173 74.6
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.3e-38 163.7 178 53.4
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.3e-38 163.7 165 78.2
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.3e-38 163.7 165 78.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.9e-38 162.5 174 74.7
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.9e-38 162.5 161 65.2
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 4.9e-38 161.8 164 67.7
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 8.4e-38 161.0 177 59.9
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.5e-37 159.5 171 61.4
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.5e-37 159.5 159 76.7
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.5e-37 159.5 160 73.1
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.5e-37 159.5 154 77.3
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 2.5e-37 159.5 159 69.8
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.2e-37 159.1 177 62.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.2e-37 158.7 172 58.1
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 4.2e-37 158.7 175 76.0
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.2e-37 158.7 173 72.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 9.3e-37 157.5 175 76.0
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.2e-36 157.1 161 77.6
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.6e-36 156.8 173 67.1
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.6e-36 156.8 174 62.1
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.1e-36 156.4 177 74.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.7e-36 156.0 151 77.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 7.9e-36 154.5 159 65.4
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.0e-35 154.1 164 75.6
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.0e-35 154.1 164 75.6
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.0e-35 154.1 174 59.8
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.0e-35 154.1 177 71.8
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.8e-35 153.3 164 62.8
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.3e-35 152.9 164 73.8
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.3e-35 152.9 164 71.3
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.0e-35 152.5 162 61.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 3.9e-35 152.1 164 73.8
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 3.9e-35 152.1 179 72.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 3.9e-35 152.1 179 72.1
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 5.1e-35 151.8 164 75.0
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 5.1e-35 151.8 166 75.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 5.1e-35 151.8 159 69.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 6.7e-35 151.4 159 73.0
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.1e-34 150.6 164 65.9
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.1e-34 150.6 157 65.0
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.1e-34 150.6 159 56.6
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.5e-34 150.2 164 72.6
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.9e-34 149.8 161 60.9
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.5e-34 149.4 173 69.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.3e-34 149.1 164 73.2
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.3e-34 149.1 158 63.3
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.3e-34 148.7 164 61.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 5.7e-34 148.3 165 61.8
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 7.4e-34 147.9 174 66.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 7.4e-34 147.9 159 74.2
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 7.4e-34 147.9 161 73.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.3e-33 147.1 173 60.7
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-33 147.1 152 72.4
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.3e-33 147.1 173 62.4
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.2e-33 146.4 177 70.1
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 2.8e-33 146.0 155 61.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 3.7e-33 145.6 173 59.5
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 4.8e-33 145.2 168 75.0
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 4.8e-33 145.2 163 73.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 6.3e-33 144.8 169 58.0
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 8.2e-33 144.4 172 61.6
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.1e-32 144.1 160 74.4
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 172 61.6
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 173 60.7
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.4e-32 142.9 170 72.4
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.1e-32 142.5 173 60.1
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.1e-32 142.5 173 60.1
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 3.1e-32 142.5 173 60.1
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 5.3e-32 141.7 173 60.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.2e-31 140.6 164 72.0
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.5e-31 140.2 163 62.0
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.5e-31 140.2 166 59.6
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 4.5e-31 138.7 240 38.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 5.9e-31 138.3 159 71.7
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-30 137.1 161 59.6
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 8.5e-30 134.4 152 60.5
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 173 71.1
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.9e-29 133.3 175 69.1
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.2e-29 132.1 174 69.0
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 7.2e-29 131.3 164 69.5
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.2e-28 130.6 164 47.0
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.2e-28 130.6 151 74.2
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 6.1e-28 128.3 150 72.0
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 6.1e-28 128.3 150 72.0
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 7.9e-28 127.9 174 67.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.0e-27 127.5 145 66.2
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.3e-27 126.3 174 67.2
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.0e-27 125.9 167 55.7
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.0e-27 125.9 169 55.6
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.9e-27 125.6 175 58.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 5.1e-27 125.2 157 68.2
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 6.7e-27 124.8 173 52.0
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.1e-26 124.0 184 49.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.1e-26 124.0 156 42.9
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-26 124.0 162 45.7
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.5e-26 122.9 162 45.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-26 122.9 162 45.1
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.5e-26 122.9 151 46.4
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.4e-26 121.3 176 67.0
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.3e-25 120.6 174 53.4
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.3e-25 120.6 163 52.1
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.3e-25 120.6 163 52.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.3e-25 120.6 163 52.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.7e-25 120.2 168 63.1
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.2e-25 119.8 166 67.5
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.8e-25 119.4 166 67.5
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.8e-25 119.4 166 67.5
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.7e-25 119.0 166 66.9
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 6.3e-25 118.2 174 52.3
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.4e-24 116.3 164 52.4
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 3.4e-23 112.5 168 66.1
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.9e-23 111.7 160 51.9
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.7e-22 110.2 130 63.8
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.1e-21 107.5 159 48.4
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 9.4e-21 104.4 131 63.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 9.4e-21 104.4 142 66.9
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.6e-20 103.6 141 54.6
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.4e-19 100.5 87 56.3
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.0e-19 99.4 122 63.1
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.0e-18 96.7 111 65.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.2e-17 93.2 132 56.1
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 3.1e-16 89.4 90 74.4
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.5e-15 87.0 138 53.6
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 7.7e-15 84.7 107 40.2
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 7.2e-13 78.2 65 60.0
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.6e-12 77.0 104 63.5
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 6.1e-12 75.1 83 47.0
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-09 67.4 44 68.2
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 3.1e-08 62.8 49 63.3


User provided reference genes

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