Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g117200 Amaranthus hybridus HOM05D001858 ORTHO05D001838 3.9e-70 268.1 143 100.0
EL10Ac5g12991 Beta vulgaris HOM05D001858 ORTHO05D001838 1.1e-32 143.7 151 58.3
Ah.12g056240 Amaranthus hybridus HOM05D001858 ORTHO05D001838 1.5e-32 143.3 161 55.3
AUR62027274 Chenopodium quinoa HOM05D001858 ORTHO05D001838 6.2e-23 111.3 156 48.1
TAR636G2404 Trochodendron aralioides HOM05D001858 ORTHO05D001838 2.5e-16 89.4 124 41.9
Rhsim10G0211900 Rhododendron simsii HOM05D001858 ORTHO05D001838 4.3e-16 88.6 141 36.2
Sopen08g027700 Solanum pennellii HOM05D001858 ORTHO05D001838 2.1e-15 86.3 145 39.3
Solyc08g079250.4 Solanum lycopersicum HOM05D001858 ORTHO05D001838 2.8e-15 85.9 146 37.7
PGSC0003DMG400004782 Solanum tuberosum HOM05D001858 ORTHO05D001838 3.6e-15 85.5 122 41.8
Cc08_g13090 Coffea canephora HOM05D001858 ORTHO05D001838 1.2e-13 80.5 144 37.5
Nitab4.5_0010189g0010 Nicotiana tabacum HOM05D001858 ORTHO05D001838 2.0e-13 79.7 136 37.5
TAR629G0091 Trochodendron aralioides HOM05D001858 ORTHO05D001838 2.6e-13 79.3 139 33.8
Peaxi162Scf00002g00311 Petunia axillaris HOM05D001858 ORTHO05D001838 3.4e-13 79.0 124 37.9
Nitab4.5_0004482g0010 Nicotiana tabacum HOM05D001858 ORTHO05D001838 4.4e-13 78.6 144 34.7
QL12p014213 Quercus lobata HOM05D001858 ORTHO05D001838 4.4e-13 78.6 144 34.7
CAN.G1394.32 Capsicum annuum HOM05D001858 ORTHO05D001838 9.9e-13 77.4 143 36.4
Psat4g069400 Pisum sativum HOM05D001858 ORTHO05D001838 9.9e-13 77.4 106 43.4
HPP92_005350 Vanilla planifolia HOM05D001858 ORTHO05D001838 9.9e-13 77.4 133 35.3
Peaxi162Scf00102g01140 Petunia axillaris HOM05D001858 ORTHO05D001838 1.7e-12 76.6 147 32.7
Actinidia02098 Actinidia chinensis HOM05D001858 ORTHO05D001838 2.9e-12 75.9 142 34.5
Dinv21585 Davidia involucrata HOM05D001858 ORTHO05D001838 3.7e-12 75.5 108 39.8
MBI04_g32269_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D000880 6.4e-12 74.7 126 35.7
PGR042G3218 Punica granatum HOM05D001858 ORTHO05D001838 8.3e-12 74.3 145 33.1
vmacro00229 Vaccinium macrocarpon HOM05D001858 ORTHO05D001838 1.1e-11 73.9 114 40.4
SEGI_06211 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 1.4e-11 73.6 146 37.7
PGSC0003DMG400012481 Solanum tuberosum HOM05D001858 ORTHO05D001838 1.4e-11 73.6 122 35.2
ATR0665G142 Amborella trichopoda HOM05D001858 ORTHO05D001838 1.9e-11 73.2 132 41.7
DCAR_008459 Daucus carota HOM05D001858 ORTHO05D001838 1.9e-11 73.2 138 36.2
Manes.01G074600 Manihot esculenta HOM05D001858 ORTHO05D001838 1.9e-11 73.2 127 40.2
Nn4g26343 Nelumbo nucifera HOM05D001858 ORTHO05D001838 1.9e-11 73.2 145 35.2
TWI81G0445 Tripterygium wilfordii HOM05D001858 ORTHO05D001838 2.4e-11 72.8 143 33.6
Nitab4.5_0001816g0220 Nicotiana tabacum HOM05D001858 ORTHO05D001838 5.4e-11 71.6 118 35.6
Solyc08g007460.3 Solanum lycopersicum HOM05D001858 ORTHO05D001838 5.4e-11 71.6 146 31.5
Hma1.2p1_1868F.1_g305930 Hydrangea macrophylla HOM05D001858 ORTHO05D001838 9.2e-11 70.9 109 34.9
Sopen08g003420 Solanum pennellii HOM05D001858 ORTHO05D001838 9.2e-11 70.9 146 30.8
arahy.Tifrunner.gnm1.ann1.F7W7FE Arachis hypogaea HOM05D001858 ORTHO05D001838 1.2e-10 70.5 124 32.3
Lalb_Chr16g0389531 Lupinus albus HOM05D001858 ORTHO05D001838 1.2e-10 70.5 149 35.6
Medtr4g101780 Medicago truncatula HOM05D001858 ORTHO05D001838 1.2e-10 70.5 141 34.8
TAR629G2117 Trochodendron aralioides HOM05D001858 ORTHO05D001838 1.2e-10 70.5 99 37.4
DCAR_004911 Daucus carota HOM05D001858 ORTHO05D001838 1.6e-10 70.1 91 40.7
Sc07g0009400 Simmondsia chinensis HOM05D001858 ORTHO05D001838 1.6e-10 70.1 144 34.0
AL2G33310 Arabidopsis lyrata HOM05D001858 ORTHO05D001838 2.1e-10 69.7 126 32.5
arahy.Tifrunner.gnm1.ann1.QHK75C Arachis hypogaea HOM05D001858 ORTHO05D001838 2.7e-10 69.3 124 31.5
Ciclev10022260m.g Citrus clementina HOM05D001858 ORTHO05D001838 2.7e-10 69.3 151 35.1
CANSAT21G1007 Cannabis sativa HOM05D001858 ORTHO05D001838 3.5e-10 68.9 142 33.8
TPR.G37687 Trifolium pratense HOM05D001858 ORTHO05D001838 3.5e-10 68.9 142 33.8
DCAR_006809 Daucus carota HOM05D001858 ORTHO05D001838 6.0e-10 68.2 110 35.5
MBI04_g47312_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D001838 7.8e-10 67.8 129 34.1
PSO782G3337 Papaver somniferum HOM05D001858 ORTHO05D001838 1.0e-09 67.4 150 30.7
Rhsim07G0103400 Rhododendron simsii HOM05D001858 ORTHO05D001838 1.3e-09 67.0 125 36.0
Thhalv10019626m.g Eutrema salsugineum HOM05D001858 ORTHO05D001838 1.7e-09 66.6 92 34.8
MBI12_g20401_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D001838 1.7e-09 66.6 117 35.0
Nn1g01118 Nelumbo nucifera HOM05D001858 ORTHO05D001838 1.7e-09 66.6 147 31.3
Potri.003G113900 Populus trichocarpa HOM05D001858 ORTHO05D001838 1.7e-09 66.6 144 34.0
Aqoxy7G00686 Aquilegia oxysepala HOM05D001858 ORTHO05D001838 2.3e-09 66.2 150 34.7
Gohir.D03G160100 Gossypium hirsutum HOM05D001858 ORTHO05D001838 2.3e-09 66.2 146 34.9
Gorai.003G168600 Gossypium raimondii HOM05D001858 ORTHO05D001838 2.3e-09 66.2 146 34.9
HanXRQChr02g0049661 Helianthus annuus HOM05D001858 ORTHO05D001838 2.3e-09 66.2 144 28.5
MBI04_g44361_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D001838 2.3e-09 66.2 114 34.2
BcaC08g46776 Brassica carinata HOM05D001858 ORTHO05D001838 3.0e-09 65.9 97 33.0
Carub.0002s2030 Capsella rubella HOM05D001858 ORTHO05D001838 3.0e-09 65.9 124 32.3
Gohir.A03G014300 Gossypium hirsutum HOM05D001858 ORTHO05D001838 3.0e-09 65.9 146 34.9
Rhsim07G0103200 Rhododendron simsii HOM05D001858 ORTHO05D001838 3.0e-09 65.9 87 36.8
unitig_52.g17501 Utricularia gibba HOM05D001858 ORTHO05D001838 3.0e-09 65.9 138 29.7
Nitab4.5_0001707g0060 Nicotiana tabacum HOM05D001858 ORTHO05D001838 3.9e-09 65.5 118 36.4
SalBow1G4970 Salvia bowleyana HOM05D001858 ORTHO05D001838 3.9e-09 65.5 117 35.0
Hund11572 Selenicereus undatus HOM05D001858 ORTHO05D001838 3.9e-09 65.5 66 48.5
Ca_12296_v3 Cicer arietinum L. HOM05D001858 ORTHO05D001838 5.1e-09 65.1 122 35.2
Sabra01G0091900 Salix brachista HOM05D001858 ORTHO05D001838 5.1e-09 65.1 146 32.2
Sabra03G0079000 Salix brachista HOM05D001858 ORTHO05D001838 5.1e-09 65.1 111 38.7
AT1G73560 Arabidopsis thaliana HOM05D001858 ORTHO05D001838 6.6e-09 64.7 124 33.1
AUR62007456 Chenopodium quinoa HOM05D001858 ORTHO05D001838 6.6e-09 64.7 144 35.4
ClCG10G003060 Citrullus lanatus HOM05D001858 ORTHO05D001838 6.6e-09 64.7 120 35.8
PGR031G3039 Punica granatum HOM05D001858 ORTHO05D001838 6.6e-09 64.7 137 33.6
Sp5g28720 Schrenkiella parvula HOM05D001858 ORTHO05D001838 6.6e-09 64.7 117 33.3
SEGI_28568 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 8.6e-09 64.3 111 36.0
ECA233G2544 Erigeron canadensis HOM05D001858 ORTHO05D001838 1.1e-08 63.9 144 31.9
HanXRQChr13g0393201 Helianthus annuus HOM05D001858 ORTHO05D001838 1.1e-08 63.9 120 33.3
MBI12_g01826_MAGBIO Magnolia biondii HOM05D000273 ORTHO05D022226 1.1e-08 63.9 130 32.3
MBI12_g42600_MAGBIO Magnolia biondii HOM05D000273 ORTHO05D022226 1.1e-08 63.9 130 32.3
Os06g0686400 Oryza sativa ssp. japonica HOM05D001858 ORTHO05D001838 1.1e-08 63.9 88 37.5
BcaB03g15718 Brassica carinata HOM05D001858 ORTHO05D001838 1.5e-08 63.5 133 30.1
CsaV3_3G003100 Cucumis sativus L. HOM05D001858 ORTHO05D001838 1.5e-08 63.5 143 32.2
Lsat_1_v5_gn_6_2261 Lactuca sativa HOM05D001858 ORTHO05D001838 1.5e-08 63.5 148 29.7
Zm00001eb273530 Zea mays HOM05D001858 ORTHO05D001838 1.5e-08 63.5 139 34.5
A07p39450 Brassica napus HOM05D001858 ORTHO05D001838 1.9e-08 63.2 131 29.8
BraA07t31494Z Brassica rapa HOM05D001858 ORTHO05D001838 1.9e-08 63.2 131 29.8
Duzib205G0294 Durio zibethinus HOM05D001858 ORTHO05D001838 1.9e-08 63.2 146 35.6
Lj2g0017697 Lotus japonicus HOM05D001858 ORTHO05D001838 1.9e-08 63.2 64 45.3
Cpa.g.sc29.112 Carica papaya HOM05D001858 ORTHO05D001838 2.5e-08 62.8 140 32.1
Manes.02G034500 Manihot esculenta HOM05D001858 ORTHO05D001838 2.5e-08 62.8 137 33.6
THA.LOC104813928 Tarenaya hassleriana HOM05D001858 ORTHO05D001838 2.5e-08 62.8 125 29.6
Cfa012784 Carpinus fangiana HOM05D001858 ORTHO05D001838 3.3e-08 62.4 141 33.3
Oeu016519.1 Olea europaea HOM05D001858 ORTHO05D001838 3.3e-08 62.4 148 31.8
PSO478G1109 Papaver somniferum HOM05D001858 ORTHO05D001838 3.3e-08 62.4 147 29.9
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 3.3e-08 62.4 105 35.2
THA.LOC104812172 Tarenaya hassleriana HOM05D001858 ORTHO05D001838 3.3e-08 62.4 98 34.7
DCAR_006808 Daucus carota HOM05D001858 ORTHO05D001838 4.3e-08 62.0 119 31.9
Potri.001G119000 Populus trichocarpa HOM05D001858 ORTHO05D001838 4.3e-08 62.0 144 34.0
MSTRG.13784 Avicennia marina HOM05D001858 ORTHO05D001838 5.6e-08 61.6 138 30.4
MELO3C013976.2 Cucumis melo HOM05D001858 ORTHO05D001838 5.6e-08 61.6 65 38.5
Duzib205G1498 Durio zibethinus HOM05D001858 ORTHO05D001838 5.6e-08 61.6 146 34.9
SEGI_26014 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 5.6e-08 61.6 141 34.0
HPP92_015060 Vanilla planifolia HOM05D001858 ORTHO05D001838 7.3e-08 61.2 140 28.6
A07p29770 Brassica napus HOM05D001858 ORTHO05D001838 9.5e-08 60.8 136 28.7
BraA07t30615Z Brassica rapa HOM05D001858 ORTHO05D000124 9.5e-08 60.8 136 28.7
Eucgr.D02016 Eucalyptus grandis HOM05D001858 ORTHO05D001838 9.5e-08 60.8 145 31.7
Nn4g26341 Nelumbo nucifera HOM05D001858 ORTHO05D001838 9.5e-08 60.8 118 33.1
Dinv21047 Davidia involucrata HOM05D001858 ORTHO05D001838 1.2e-07 60.5 87 31.0
MD04G1081000 Malus domestica HOM05D001858 ORTHO05D001838 1.2e-07 60.5 145 31.0
EL10Ac5g12987 Beta vulgaris HOM05D001858 ORTHO05D001838 1.6e-07 60.1 133 36.1
CiPaw.11G149500 Carya illinoinensis HOM05D001858 ORTHO05D001838 1.6e-07 60.1 144 31.2
Haze_08591 Corylus avellana HOM05D001858 ORTHO05D001838 1.6e-07 60.1 83 34.9
Duzib068G0912 Durio zibethinus HOM05D001858 ORTHO05D001838 1.6e-07 60.1 149 33.6
BolC6t39805H Brassica oleracea HOM05D001858 ORTHO05D001838 2.1e-07 59.7 132 29.5
Carub.0002s0219 Capsella rubella HOM05D001858 ORTHO05D001838 2.1e-07 59.7 150 34.7
Gohir.D08G191700 Gossypium hirsutum HOM05D001858 ORTHO05D001838 2.1e-07 59.7 144 33.3
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 2.1e-07 59.7 88 33.0
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 2.1e-07 59.7 99 34.3
Potri.015G036201 Populus trichocarpa HOM05D001858 ORTHO05D001838 2.8e-07 59.3 99 39.4
SEGI_10227 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 2.8e-07 59.3 118 28.0
SEGI_27715 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 2.8e-07 59.3 125 32.8
Actinidia05177 Actinidia chinensis HOM05D001858 ORTHO05D001838 3.6e-07 58.9 123 33.3
AUR62027276 Chenopodium quinoa HOM05D001858 ORTHO05D001838 3.6e-07 58.9 143 35.0
SGA_v2.0_scaffold144G35993 Striga asiatica HOM05D001858 ORTHO05D001838 3.6e-07 58.9 132 31.1
Sc01g0009260 Simmondsia chinensis HOM05D001858 ORTHO05D001838 4.7e-07 58.5 120 35.0
Migut.E00883 Erythranthe guttata HOM05D001858 ORTHO05D001838 6.2e-07 58.2 141 30.5
Gohir.A08G172900 Gossypium hirsutum HOM05D001858 ORTHO05D001838 6.2e-07 58.2 139 30.9
Os10g0191100 Oryza sativa ssp. japonica HOM05D001858 ORTHO05D001838 6.2e-07 58.2 121 33.9
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 8.1e-07 57.8 89 34.8
ClCG04G010550 Citrullus lanatus HOM05D001858 ORTHO05D001838 8.1e-07 57.8 88 42.0
Eucgr.E00466 Eucalyptus grandis HOM05D001858 ORTHO05D001838 8.1e-07 57.8 129 30.2
Rhsim07G0103500 Rhododendron simsii HOM05D001858 ORTHO05D001838 8.1e-07 57.8 97 39.2
Sed0003966 Sechium edule HOM05D001858 ORTHO05D001838 8.1e-07 57.8 142 33.1
Gorai.004G201700 Gossypium raimondii HOM05D001858 ORTHO05D001838 1.1e-06 57.4 144 32.6
Sp2g01820 Schrenkiella parvula HOM05D001858 ORTHO05D001838 1.1e-06 57.4 143 32.2
Peaxi162Scf00051g00001 Petunia axillaris HOM05D001858 ORTHO05D001838 1.4e-06 57.0 152 27.6
arahy.Tifrunner.gnm1.ann1.XS8ZHY Arachis hypogaea HOM05D001858 ORTHO05D001838 1.8e-06 56.6 121 34.7
Haze_08594 Corylus avellana HOM05D001858 ORTHO05D001838 1.8e-06 56.6 110 33.6
Peaxi162Scf00319g00511 Petunia axillaris HOM05D001858 ORTHO05D001838 1.8e-06 56.6 86 33.7
PGSC0003DMG400043645 Solanum tuberosum HOM05D001858 ORTHO05D001838 1.8e-06 56.6 93 36.6
Migut.E01691 Erythranthe guttata HOM05D001858 ORTHO05D001838 2.4e-06 56.2 129 31.8
Actinidia27437 Actinidia chinensis HOM05D001858 ORTHO05D001838 3.1e-06 55.8 122 30.3
BolC9t54829H Brassica oleracea HOM05D001858 ORTHO05D001838 3.1e-06 55.8 81 37.0
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 3.1e-06 55.8 112 32.1
Potri.005G211900 Populus trichocarpa HOM05D000489 ORTHO05D000372 3.1e-06 55.8 121 34.7
Aa31LG4G3760 Aethionema arabicum HOM05D001858 ORTHO05D001838 4.0e-06 55.5 114 35.1
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 4.0e-06 55.5 91 33.0
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 4.0e-06 55.5 91 33.0
Hund28379 Selenicereus undatus HOM05D001858 ORTHO05D001838 4.0e-06 55.5 117 34.2
Hund28380 Selenicereus undatus HOM05D001858 ORTHO05D001838 4.0e-06 55.5 117 34.2
VMungo0464G0752 Vigna mungo HOM05D001858 ORTHO05D001838 4.0e-06 55.5 100 33.0
BcaC06g31912 Brassica carinata HOM05D001858 ORTHO05D001838 5.2e-06 55.1 111 29.7
CARHR049050 Cardamine hirsuta HOM05D001858 ORTHO05D001838 5.2e-06 55.1 144 29.9
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 5.2e-06 55.1 74 35.1
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 5.2e-06 55.1 136 30.9
Sp5g28710 Schrenkiella parvula HOM05D001858 ORTHO05D001838 5.2e-06 55.1 78 33.3
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 5.2e-06 55.1 87 31.0
DCAR_027807 Daucus carota HOM05D001858 ORTHO05D001838 6.8e-06 54.7 75 38.7
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 6.8e-06 54.7 121 32.2
Zm00001eb225620 Zea mays HOM05D001858 ORTHO05D001838 6.8e-06 54.7 134 31.3
Aa31LG7G2810 Aethionema arabicum HOM05D001858 ORTHO05D001838 8.9e-06 54.3 88 33.0
Ah.02g117210 Amaranthus hybridus HOM05D001858 ORTHO05D001838 8.9e-06 54.3 161 28.0
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 8.9e-06 54.3 68 39.7
Duzib133G1377 Durio zibethinus HOM05D000489 ORTHO05D000372 8.9e-06 54.3 126 32.5
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 8.9e-06 54.3 91 36.3
Sopen08g027690 Solanum pennellii HOM05D001858 ORTHO05D001838 8.9e-06 54.3 91 35.2


User provided reference genes

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