Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g116280 Amaranthus hybridus HOM05D006581 ORTHO05D007870 0.0e+00 1608.2 822 100.0
EL10Ac5g12666 Beta vulgaris HOM05D006581 ORTHO05D007870 0.0e+00 1105.1 829 69.2
AUR62004835 Chenopodium quinoa HOM05D006581 ORTHO05D007870 4.4e-307 1057.7 739 73.6
AUR62040923 Chenopodium quinoa HOM05D006581 ORTHO05D007870 7.5e-307 1057.0 739 73.6
Hund14684 Selenicereus undatus HOM05D006581 ORTHO05D007870 1.2e-293 1013.1 830 64.0
GSVIVG01019912001 Vitis vinifera HOM05D006581 ORTHO05D007870 9.9e-259 897.1 818 58.2
Atru.chr12.1085 Acer truncatum HOM05D006581 ORTHO05D007870 8.4e-250 867.5 831 56.6
Ciclev10014277m.g Citrus clementina HOM05D006581 ORTHO05D007870 1.4e-249 866.7 821 57.0
Cfa012052 Carpinus fangiana HOM05D006581 ORTHO05D007870 6.0e-248 861.3 819 56.5
QL12p015968 Quercus lobata HOM05D006581 ORTHO05D007870 3.0e-247 859.0 819 57.3
Haze_09013 Corylus avellana HOM05D006581 ORTHO05D007870 7.4e-246 854.4 819 56.9
CiPaw.08G049100 Carya illinoinensis HOM05D006581 ORTHO05D007870 1.3e-245 853.6 834 56.2
Prupe.1G071100 Prunus persica HOM05D006581 ORTHO05D007870 8.2e-245 850.9 816 57.1
Lj8A253T47 Lonicera japonica HOM05D006581 ORTHO05D007870 1.1e-244 850.5 825 55.8
Nn3g19980 Nelumbo nucifera HOM05D006581 ORTHO05D007870 5.3e-244 848.2 832 55.8
RcHm_v2.0_Chr4g0398711 Rosa chinensis HOM05D006581 ORTHO05D007870 1.5e-243 846.7 835 55.1
Potri.008G016000 Populus trichocarpa HOM05D006581 ORTHO05D007870 3.4e-243 845.5 800 55.8
Actinidia27421 Actinidia chinensis HOM05D006581 ORTHO05D007870 4.5e-243 845.1 816 56.9
TAR629G0084 Trochodendron aralioides HOM05D006581 ORTHO05D007870 7.6e-243 844.3 830 55.7
Hma1.2p1_0017F.1_g011220 Hydrangea macrophylla HOM05D006581 ORTHO05D007870 1.3e-242 843.6 827 56.5
MD15G1394600 Malus domestica HOM05D006581 ORTHO05D007870 7.2e-241 837.8 803 56.9
Duzib128G1875 Durio zibethinus HOM05D006581 ORTHO05D007870 6.1e-240 834.7 825 56.5
FvH4_4g06790 Fragaria vesca HOM05D006581 ORTHO05D007870 3.0e-239 832.4 802 55.6
Sabra08G0009700 Salix brachista HOM05D006581 ORTHO05D007870 3.9e-239 832.0 819 54.7
FAN12G3574 Fragaria x ananassa HOM05D006581 ORTHO05D007870 5.1e-239 831.6 802 55.6
CANSAT78G1168 Cannabis sativa HOM05D006581 ORTHO05D007870 3.1e-236 822.4 825 54.3
Rhsim07G0097400 Rhododendron simsii HOM05D006581 ORTHO05D007870 1.5e-235 820.1 816 54.9
Gorai.N007200 Gossypium raimondii HOM05D006581 ORTHO05D007870 2.5e-233 812.8 822 54.6
Gohir.A06G170200 Gossypium hirsutum HOM05D006581 ORTHO05D007870 7.2e-233 811.2 829 54.6
Gohir.D06G178000 Gossypium hirsutum HOM05D006581 ORTHO05D007870 9.4e-233 810.8 825 54.3
Peaxi162Scf00620g00237 Petunia axillaris HOM05D006581 ORTHO05D007870 3.6e-232 808.9 820 53.8
Thecc.10G119000 Theobroma cacao HOM05D006581 ORTHO05D007870 3.6e-232 808.9 837 54.7
TWI38G0425 Tripterygium wilfordii HOM05D006581 ORTHO05D007870 1.4e-231 807.0 800 53.8
Cpa.g.sc33.130 Carica papaya HOM05D006581 ORTHO05D007870 5.1e-231 805.1 814 54.7
Nitab4.5_0010186g0020 Nicotiana tabacum HOM05D006581 ORTHO05D007870 1.1e-230 803.9 835 53.2
Aqoxy7G00548 Aquilegia oxysepala HOM05D006581 ORTHO05D007870 3.1e-228 795.8 799 52.9
Sed0002136 Sechium edule HOM05D006581 ORTHO05D007870 7.7e-227 791.2 827 53.6
Solyc08g079810.4 Solanum lycopersicum HOM05D006581 ORTHO05D007870 1.0e-226 790.8 835 52.7
Nitab4.5_0005167g0030 Nicotiana tabacum HOM05D006581 ORTHO05D007870 1.9e-225 786.6 835 52.5
Cc03_g06340 Coffea canephora HOM05D006581 ORTHO05D007870 4.2e-225 785.4 804 53.6
PGSC0003DMG400003942 Solanum tuberosum HOM05D006581 ORTHO05D007870 5.5e-225 785.0 835 52.1
Sopen08g028170 Solanum pennellii HOM05D006581 ORTHO05D007870 2.1e-224 783.1 835 52.5
ClCG10G003370 Citrullus lanatus HOM05D006581 ORTHO05D007870 3.6e-224 782.3 819 52.9
ClCG00G000120 Citrullus lanatus HOM05D006581 ORTHO05D007870 2.3e-223 779.6 816 52.9
DCAR_000885 Daucus carota HOM05D006581 ORTHO05D007870 3.9e-223 778.9 825 52.6
Oeu001905.1 Olea europaea HOM05D006581 ORTHO05D007870 6.7e-223 778.1 807 53.4
ECA233G4444 Erigeron canadensis HOM05D006581 ORTHO05D007870 3.3e-222 775.8 803 52.7
PSO478G1557 Papaver somniferum HOM05D006581 ORTHO05D007870 7.4e-222 774.6 827 52.6
PSO782G3179 Papaver somniferum HOM05D006581 ORTHO05D007870 2.2e-221 773.1 827 52.4
Manes.10G064500 Manihot esculenta HOM05D006581 ORTHO05D007870 7.0e-220 768.1 801 53.8
MBI12_g26094_MAGBIO Magnolia biondii HOM05D006581 ORTHO05D007870 1.6e-219 766.9 814 52.9
Lj3g0012962 Lotus japonicus HOM05D006581 ORTHO05D007870 5.9e-219 765.0 821 51.6
CsaV3_3G003400 Cucumis sativus L. HOM05D006581 ORTHO05D007870 3.2e-217 759.2 808 52.1
MELO3C014006.2 Cucumis melo HOM05D006581 ORTHO05D007870 3.6e-216 755.7 806 52.1
Lsat_1_v5_gn_8_138880 Lactuca sativa HOM05D006581 ORTHO05D007870 6.1e-216 755.0 801 51.4
arahy.Tifrunner.gnm1.ann1.J373DC Arachis hypogaea HOM05D006581 ORTHO05D007870 1.2e-214 750.7 834 49.8
THA.LOC104812128 Tarenaya hassleriana HOM05D006581 ORTHO05D007870 1.5e-214 750.4 770 53.5
Lalb_Chr01g0006991 Lupinus albus HOM05D006581 ORTHO05D007870 9.7e-214 747.7 799 51.4
Ca_14132_v3 Cicer arietinum L. HOM05D006581 ORTHO05D007870 1.2e-211 740.7 829 49.3
TPR.G5149 Trifolium pratense HOM05D006581 ORTHO05D007870 2.7e-211 739.6 808 51.0
Psat7g256920 Pisum sativum HOM05D006581 ORTHO05D007870 5.9e-211 738.4 827 50.1
arahy.Tifrunner.gnm1.ann1.MU0C19 Arachis hypogaea HOM05D006581 ORTHO05D007870 7.7e-211 738.0 809 49.8
ClCG00G004880 Citrullus lanatus HOM05D006581 ORTHO05D007870 8.5e-210 734.6 748 53.3
Migut.E01071 Erythranthe guttata HOM05D006581 ORTHO05D007870 2.1e-208 729.9 826 49.5
Thhalv10018136m.g Eutrema salsugineum HOM05D006581 ORTHO05D007870 2.1e-208 729.9 828 50.5
COL.COLO4_10009 Corchorus olitorius HOM05D006581 ORTHO05D007870 1.7e-205 720.3 803 51.3
AL2G33810 Arabidopsis lyrata HOM05D006581 ORTHO05D007870 3.7e-205 719.2 819 50.2
AT1G73970 Arabidopsis thaliana HOM05D006581 ORTHO05D007870 4.8e-205 718.8 823 49.1
Sp5g29170 Schrenkiella parvula HOM05D006581 ORTHO05D007870 4.8e-205 718.8 824 50.4
Medtr3g010350 Medicago truncatula HOM05D006581 ORTHO05D007870 5.4e-204 715.3 822 49.5
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 1.2e-203 714.1 794 50.9
Aa31LG4G4270 Aethionema arabicum HOM05D006581 ORTHO05D007870 2.7e-203 713.0 814 49.4
CARHR067090 Cardamine hirsuta HOM05D006581 ORTHO05D007870 4.5e-203 712.2 817 49.8
SGA_v2.0_scaffold196G40922 Striga asiatica HOM05D006581 ORTHO05D007870 1.0e-202 711.1 822 49.1
A07p39830 Brassica napus HOM05D006581 ORTHO05D007870 5.0e-202 708.8 792 51.4
Carub.0002s2075 Capsella rubella HOM05D006581 ORTHO05D007870 6.5e-202 708.4 822 49.6
HanXRQChr04g0124681 Helianthus annuus HOM05D006581 ORTHO05D007870 1.9e-201 706.8 762 51.2
BraA07t31529Z Brassica rapa HOM05D006581 ORTHO05D007870 4.2e-201 705.7 792 51.3
FAN07G0243 Fragaria x ananassa HOM05D006581 ORTHO05D007870 2.1e-200 703.4 802 49.5
Lj8C252T14 Lonicera japonica HOM05D006581 ORTHO05D007870 3.0e-199 699.5 825 48.6
BolC6t39844H Brassica oleracea HOM05D006581 ORTHO05D007870 5.2e-199 698.7 794 50.1
Sc01g0009010 Simmondsia chinensis HOM05D006581 ORTHO05D007870 3.1e-196 689.5 608 58.7
Glyma.06G323200 Glycine max HOM05D006581 ORTHO05D007870 6.1e-192 675.2 809 47.3
BcaC08g46826 Brassica carinata HOM05D006581 ORTHO05D007870 1.0e-191 674.5 794 49.5
Phvul.005G003000 Phaseolus vulgaris HOM05D006581 ORTHO05D007870 1.3e-189 667.5 812 48.0
VMungo1080G1314 Vigna mungo HOM05D006581 ORTHO05D007870 5.4e-188 662.1 803 46.7
SHI19174 Sapria himalayana HOM05D006581 ORTHO05D007870 9.2e-180 634.8 833 44.8
SalBow7G1099 Salvia bowleyana HOM05D006581 ORTHO05D007870 3.6e-176 622.9 798 46.6
Dinv39047 Davidia involucrata HOM05D006581 ORTHO05D007870 1.9e-172 610.5 657 52.2
unitig_26.g9687 Utricularia gibba HOM05D006581 ORTHO05D007870 9.2e-172 608.2 814 43.1
MBI12_g05899_MAGBIO Magnolia biondii HOM05D006581 ORTHO05D007870 1.2e-166 591.3 743 47.9
Dinv37725 Davidia involucrata HOM05D006581 ORTHO05D007870 1.7e-165 587.4 616 54.2
FAN17G3070 Fragaria x ananassa HOM05D006581 ORTHO05D007870 3.4e-158 563.1 611 51.6
ATR0757G052 Amborella trichopoda HOM05D006581 ORTHO05D007870 1.3e-157 561.2 816 42.0
CDE05G1723 Ceratophyllum demersum HOM05D006581 ORTHO05D007870 1.8e-151 540.8 816 41.2
Hma1.2p1_0017F.1_g011230 Hydrangea macrophylla HOM05D006581 ORTHO05D007870 6.2e-144 515.8 560 52.1
vmacro14025 Vaccinium macrocarpon HOM05D006581 ORTHO05D007870 9.0e-135 485.3 415 59.8
Zm00001eb230550 Zea mays HOM05D006581 ORTHO05D007870 1.1e-132 478.4 654 43.7
Eucgr.E00519 Eucalyptus grandis HOM05D006581 ORTHO05D007870 1.2e-131 474.9 567 48.1
CSS0016486 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 3.7e-120 436.8 487 50.7
Hma1.2p1_0138F.1_g062900 Hydrangea macrophylla HOM05D006581 ORTHO05D007870 1.9e-116 424.5 756 39.3
Ciclev10017584m.g Citrus clementina HOM05D006581 ORTHO05D007870 4.7e-115 419.9 350 62.3
Medtr4g059740 Medicago truncatula HOM05D006581 ORTHO05D007870 1.8e-106 391.3 521 44.5
Ciclev10006485m.g Citrus clementina HOM05D006581 ORTHO05D007870 6.3e-96 356.3 307 60.9
Mapoly0035s0119 Marchantia polymorpha HOM05D006581 ORTHO05D007870 1.0e-85 322.4 908 28.4
Ciclev10006576m.g Citrus clementina HOM05D006581 ORTHO05D007870 1.3e-80 305.4 302 56.0
Migut.J01229 Erythranthe guttata HOM05D006581 ORTHO05D007870 1.3e-80 305.4 290 56.6
CSS0046982 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 9.2e-79 299.3 485 41.0
Pp3c5_4510 Physcomitrium patens HOM05D006581 ORTHO05D007870 9.2e-79 299.3 845 29.6
CSS0026570 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 3.7e-72 277.3 207 66.7
Eucgr.E00518 Eucalyptus grandis HOM05D006581 ORTHO05D007870 1.2e-67 262.3 208 63.0
SMO118G0399 Selaginella moellendorffii HOM05D006581 ORTHO05D007870 7.1e-63 246.5 822 27.5
SEGI_20261 Sequoiadendron giganteum HOM05D006581 ORTHO05D007870 4.0e-58 230.7 254 50.8
Os02g0123400 Oryza sativa ssp. japonica HOM05D006581 ORTHO05D007870 1.2e-49 202.6 403 34.0
AagrBONN_evm.TU.Sc2ySwM_228.3501 Anthoceros agrestis HOM05D006581 ORTHO05D007870 4.4e-49 200.7 541 27.7
CSS0037330 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 6.4e-40 170.2 208 47.1
SEGI_01852 Sequoiadendron giganteum HOM05D006581 ORTHO05D007870 1.3e-35 156.0 564 28.2
CBR_g52136 Chara braunii HOM05D006581 ORTHO05D007870 2.8e-19 101.7 464 24.6
Lj8P252T34 Lonicera japonica HOM05D006581 ORTHO05D007870 2.6e-17 95.1 71 59.2
Sabra10G0190600 Salix brachista HOM05D006581 ORTHO05D007870 2.2e-11 75.5 144 38.9


User provided reference genes

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