Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g115780 Amaranthus hybridus HOM05D016442 ORTHO05D017253 6.0e-62 240.7 128 100.0
AUR62010493 Chenopodium quinoa HOM05D016442 ORTHO05D017253 6.5e-32 141.0 125 60.8
AUR62010496 Chenopodium quinoa HOM05D016442 ORTHO05D017253 8.8e-29 130.6 125 58.4
AUR62017409 Chenopodium quinoa HOM05D000220 ORTHO05D017253 5.7e-28 127.9 124 54.8
AUR62017410 Chenopodium quinoa HOM05D000220 ORTHO05D017253 5.7e-28 127.9 124 54.8
AUR62017408 Chenopodium quinoa HOM05D016442 ORTHO05D017253 2.2e-27 125.9 131 55.7
AUR62010494 Chenopodium quinoa HOM05D016442 ORTHO05D017253 1.8e-26 122.9 131 54.2
AUR62010495 Chenopodium quinoa HOM05D016442 ORTHO05D017253 1.8e-26 122.9 131 54.2
EL10Ac5g12600 Beta vulgaris HOM05D016442 ORTHO05D017253 1.0e-16 90.5 147 45.6
Ah.02g127460 Amaranthus hybridus HOM05D016442 ORTHO05D061200 3.1e-10 68.9 105 43.8
GSVIVG01001297001 Vitis vinifera HOM05D000220 ORTHO05D000141 5.9e-09 64.7 95 47.4
CSS0006633 Camellia sinensis var. sinensis HOM05D000127 ORTHO05D000243 1.7e-08 63.2 106 40.6
GSVIVG01001299001 Vitis vinifera HOM05D000220 ORTHO05D000141 2.2e-08 62.8 131 36.6
AUR62007497 Chenopodium quinoa HOM05D000220 ORTHO05D000141 5.0e-08 61.6 132 37.9
Nitab4.5_0003417g0010 Nicotiana tabacum HOM05D000220 ORTHO05D000141 5.0e-08 61.6 102 42.2
Migut.A00818 Erythranthe guttata HOM05D000220 ORTHO05D000141 6.5e-08 61.2 101 38.6
AT4G12470 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 8.5e-08 60.8 58 50.0
Eucgr.D02488 Eucalyptus grandis HOM05D000220 ORTHO05D000141 1.1e-07 60.5 115 36.5
AL6G47350 Arabidopsis lyrata HOM05D000220 ORTHO05D000141 1.5e-07 60.1 60 46.7
AL6G47410 Arabidopsis lyrata HOM05D000220 ORTHO05D000141 1.5e-07 60.1 60 46.7
Carub.0006s3165 Capsella rubella HOM05D000220 ORTHO05D000141 1.5e-07 60.1 60 46.7
Carub.0006s3166 Capsella rubella HOM05D000220 ORTHO05D000141 1.5e-07 60.1 60 46.7
Eucgr.D02045 Eucalyptus grandis HOM05D000220 ORTHO05D000141 1.5e-07 60.1 107 38.3
Lsat_1_v5_gn_7_47621 Lactuca sativa HOM05D000220 ORTHO05D000141 1.5e-07 60.1 102 38.2
AT4G12480 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 1.9e-07 59.7 60 46.7
MSTRG.12080 Avicennia marina HOM05D000220 ORTHO05D000141 1.9e-07 59.7 97 39.2
EL10Ac5g13031 Beta vulgaris HOM05D000220 ORTHO05D000141 1.9e-07 59.7 134 36.6
EL10Ac5g13032 Beta vulgaris HOM05D000220 ORTHO05D000141 1.9e-07 59.7 134 36.6
EL10Ac5g13033 Beta vulgaris HOM05D000220 ORTHO05D000141 1.9e-07 59.7 134 36.6
EL10Ac5g13034 Beta vulgaris HOM05D000220 ORTHO05D000141 1.9e-07 59.7 134 36.6
EL10Ac5g13035 Beta vulgaris HOM05D000220 ORTHO05D000141 1.9e-07 59.7 134 36.6
Carub.0006s3163 Capsella rubella HOM05D000220 ORTHO05D000141 1.9e-07 59.7 60 46.7
Carub.0006s3164 Capsella rubella HOM05D000220 ORTHO05D000141 1.9e-07 59.7 60 46.7
CARHR140400 Cardamine hirsuta HOM05D000220 ORTHO05D000141 2.5e-07 59.3 105 42.9
Dinv39122 Davidia involucrata HOM05D000220 ORTHO05D000141 3.2e-07 58.9 100 37.0
SalBow6G4515 Salvia bowleyana HOM05D000220 ORTHO05D000141 3.2e-07 58.9 83 38.6
Solyc03g091030.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 3.2e-07 58.9 126 35.7
Solyc03g091035.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 3.2e-07 58.9 126 35.7
TPR.G37686 Trifolium pratense HOM05D000220 ORTHO05D000141 3.2e-07 58.9 75 46.7
AT4G12500 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 4.2e-07 58.5 60 46.7
MSTRG.1863 Avicennia marina HOM05D000220 ORTHO05D000141 4.2e-07 58.5 105 37.1
Lj2A214T81 Lonicera japonica HOM05D000220 ORTHO05D000141 4.2e-07 58.5 124 33.9
AL6G47420 Arabidopsis lyrata HOM05D000220 ORTHO05D000141 5.5e-07 58.2 60 46.7
AL6G47440 Arabidopsis lyrata HOM05D000220 ORTHO05D000141 5.5e-07 58.2 60 46.7
MSTRG.25532 Avicennia marina HOM05D000220 ORTHO05D000141 5.5e-07 58.2 98 36.7
AUR62039951 Chenopodium quinoa HOM05D000220 ORTHO05D000141 5.5e-07 58.2 132 36.4
FAN06G1932 Fragaria x ananassa HOM05D000220 ORTHO05D000141 5.5e-07 58.2 105 36.2
Os03g0103300 Oryza sativa ssp. japonica HOM05D000220 ORTHO05D000141 5.5e-07 58.2 95 37.9
Solyc03g090990.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 5.5e-07 58.2 126 34.1
Solyc03g091020.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 5.5e-07 58.2 126 34.1
Solyc03g093060.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 5.5e-07 58.2 126 34.1
TWI60G0754 Tripterygium wilfordii HOM05D000220 ORTHO05D000141 5.5e-07 58.2 138 37.7
AT4G12490 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 7.2e-07 57.8 60 46.7
EL10Ac5g13036 Beta vulgaris HOM05D000220 ORTHO05D000141 7.2e-07 57.8 134 35.1
FvH4_2g28871 Fragaria vesca HOM05D000220 ORTHO05D000141 7.2e-07 57.8 58 55.2
FvH4_7g11180 Fragaria vesca HOM05D000220 ORTHO05D000141 7.2e-07 57.8 105 36.2
FAN06G3759 Fragaria x ananassa HOM05D000220 ORTHO05D000141 7.2e-07 57.8 104 36.5
FAN10G2275 Fragaria x ananassa HOM05D000220 ORTHO05D000141 7.2e-07 57.8 105 36.2
FAN24G0525 Fragaria x ananassa HOM05D000220 ORTHO05D000141 7.2e-07 57.8 58 55.2
Lsat_1_v5_gn_7_47581 Lactuca sativa HOM05D000220 ORTHO05D000141 7.2e-07 57.8 58 48.3
Lsat_1_v5_gn_7_47721 Lactuca sativa HOM05D000220 ORTHO05D000141 7.2e-07 57.8 102 36.3
QL02p021356 Quercus lobata HOM05D000220 ORTHO05D000141 7.2e-07 57.8 99 40.4
Solyc03g091010.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 7.2e-07 57.8 126 34.1
EL10Ac5g13046 Beta vulgaris HOM05D000220 ORTHO05D000141 9.4e-07 57.4 132 35.6
CSS0013513 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 9.4e-07 57.4 151 34.4
Carub.0006s3167 Capsella rubella HOM05D000220 ORTHO05D000141 9.4e-07 57.4 73 43.8
BcaC04g21237 Brassica carinata HOM05D000220 ORTHO05D000141 1.2e-06 57.0 60 45.0
C09p34010 Brassica napus HOM05D000220 ORTHO05D000141 1.2e-06 57.0 60 45.0
BolC9t56239H Brassica oleracea HOM05D000220 ORTHO05D000141 1.2e-06 57.0 60 45.0
Carub.0004s2780 Capsella rubella HOM05D000220 ORTHO05D000141 1.2e-06 57.0 108 39.8
Cpa.g.sc276.4 Carica papaya HOM05D000220 ORTHO05D000141 1.2e-06 57.0 143 34.3
Ca_25931_v3 Cicer arietinum L. HOM05D000220 ORTHO05D000141 1.2e-06 57.0 71 47.9
Thhalv10029038m.g Eutrema salsugineum HOM05D000220 ORTHO05D000141 1.2e-06 57.0 60 43.3
Thhalv10029528m.g Eutrema salsugineum HOM05D000220 ORTHO05D000141 1.2e-06 57.0 60 43.3
RcHm_v2.0_Chr1g0349261 Rosa chinensis HOM05D000220 ORTHO05D000141 1.2e-06 57.0 141 31.9
Sp6g05080 Schrenkiella parvula HOM05D000220 ORTHO05D000141 1.2e-06 57.0 60 45.0
Ah.12g056660 Amaranthus hybridus HOM05D000220 ORTHO05D000141 1.6e-06 56.6 98 41.8
A09p26840 Brassica napus HOM05D000220 ORTHO05D000141 1.6e-06 56.6 60 45.0
BraA09t38256Z Brassica rapa HOM05D000220 ORTHO05D000141 1.6e-06 56.6 60 45.0
Cfa012752 Carpinus fangiana HOM05D000220 ORTHO05D000141 1.6e-06 56.6 66 43.9
Nitab4.5_0004059g0070 Nicotiana tabacum HOM05D000220 ORTHO05D000141 1.6e-06 56.6 102 42.2
Sp6g05070 Schrenkiella parvula HOM05D000220 ORTHO05D000141 1.6e-06 56.6 60 45.0
HPP92_028040 Vanilla planifolia HOM05D000220 ORTHO05D000141 1.6e-06 56.6 59 45.8
Ah.12g056630 Amaranthus hybridus HOM05D000220 ORTHO05D000141 2.1e-06 56.2 58 48.3
AT2G45180 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 2.1e-06 56.2 108 39.8
BraA03t11710Z Brassica rapa HOM05D000220 ORTHO05D000141 2.1e-06 56.2 105 41.0
CiPaw.11G152100 Carya illinoinensis HOM05D000220 ORTHO05D000141 2.1e-06 56.2 111 36.9
Haze_07876 Corylus avellana HOM05D000220 ORTHO05D000141 2.1e-06 56.2 145 33.1
Duzib068G1005 Durio zibethinus HOM05D000220 ORTHO05D000141 2.1e-06 56.2 110 39.1
FAN15G2577 Fragaria x ananassa HOM05D000220 ORTHO05D000141 2.1e-06 56.2 58 53.4
FAN20G0960 Fragaria x ananassa HOM05D000220 ORTHO05D000141 2.1e-06 56.2 61 52.5
FAN27G2389 Fragaria x ananassa HOM05D000220 ORTHO05D000141 2.1e-06 56.2 61 52.5
Medtr4g101330 Medicago truncatula HOM05D000220 ORTHO05D000141 2.1e-06 56.2 73 46.6
Psat0s799g0040 Pisum sativum HOM05D000220 ORTHO05D000141 2.1e-06 56.2 74 44.6
TWI81G0095 Tripterygium wilfordii HOM05D000220 ORTHO05D000141 2.1e-06 56.2 83 45.8
Ah.03g147700 Amaranthus hybridus HOM05D000220 ORTHO05D000141 2.7e-06 55.8 53 47.2
arahy.Tifrunner.gnm1.ann1.X4KH7K Arachis hypogaea HOM05D000220 ORTHO05D000141 2.7e-06 55.8 72 41.7
CANSAT21G0892 Cannabis sativa HOM05D000220 ORTHO05D000141 2.7e-06 55.8 95 36.8
CAN.G1227.8 Capsicum annuum HOM05D000220 ORTHO05D000141 2.7e-06 55.8 94 35.1
DCAR_007926 Daucus carota HOM05D000220 ORTHO05D000141 2.7e-06 55.8 101 34.7
Os06g0168700 Oryza sativa ssp. japonica HOM05D000220 ORTHO05D000141 2.7e-06 55.8 56 44.6
Solyc03g091000.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 2.7e-06 55.8 126 34.9
TWI15G0851 Tripterygium wilfordii HOM05D000220 ORTHO05D000141 2.7e-06 55.8 85 47.1
Atru.chr9.1353 Acer truncatum HOM05D000220 ORTHO05D000141 3.6e-06 55.5 58 46.6
CSS0012496 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 3.6e-06 55.5 116 33.6
CSS0036665 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 3.6e-06 55.5 151 32.5
CANSAT64G2768 Cannabis sativa HOM05D000220 ORTHO05D000141 3.6e-06 55.5 53 47.2
CAN.G195.20 Capsicum annuum HOM05D000220 ORTHO05D000141 3.6e-06 55.5 60 51.7
CARHR253710 Cardamine hirsuta HOM05D000220 ORTHO05D000141 3.6e-06 55.5 104 34.6
CsaV3_5G004090 Cucumis sativus L. HOM05D000220 ORTHO05D000141 3.6e-06 55.5 87 41.4
Glyma.05G057300 Glycine max HOM05D000220 ORTHO05D000141 3.6e-06 55.5 63 47.6
Lj2C214T10 Lonicera japonica HOM05D000220 ORTHO05D000141 3.6e-06 55.5 146 32.9
Lj4g0014731 Lotus japonicus HOM05D000220 ORTHO05D000141 3.6e-06 55.5 102 37.3
Nitab4.5_0003531g0020 Nicotiana tabacum HOM05D000220 ORTHO05D000141 3.6e-06 55.5 114 33.3
Psat4g071360 Pisum sativum HOM05D000220 ORTHO05D000141 3.6e-06 55.5 113 39.8
Rhsim07G0106100 Rhododendron simsii HOM05D000220 ORTHO05D000141 3.6e-06 55.5 106 32.1
BcaC02g11251 Brassica carinata HOM05D000220 ORTHO05D000141 4.7e-06 55.1 60 41.7
C03p35970 Brassica napus HOM05D000220 ORTHO05D000141 4.7e-06 55.1 60 41.7
C04p18790 Brassica napus HOM05D000220 ORTHO05D000141 4.7e-06 55.1 60 41.7
BolC4t23409H Brassica oleracea HOM05D000220 ORTHO05D000141 4.7e-06 55.1 60 41.7
CANSAT56G4529 Cannabis sativa HOM05D000220 ORTHO05D000141 4.7e-06 55.1 109 34.9
CARHR253730 Cardamine hirsuta HOM05D000220 ORTHO05D000141 4.7e-06 55.1 60 46.7
DCAR_004936 Daucus carota HOM05D000220 ORTHO05D000141 4.7e-06 55.1 119 31.9
Glyma.05G057100 Glycine max HOM05D000220 ORTHO05D000141 4.7e-06 55.1 71 46.5
Psat4g069880 Pisum sativum HOM05D000220 ORTHO05D000141 4.7e-06 55.1 113 38.9
Sabra06G0006600 Salix brachista HOM05D000220 ORTHO05D000141 4.7e-06 55.1 53 45.3
SalBow6G5702 Salvia bowleyana HOM05D000220 ORTHO05D000141 4.7e-06 55.1 99 35.4
Solyc03g093050.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 4.7e-06 55.1 126 33.3
THA.LOC104809464 Tarenaya hassleriana HOM05D000220 ORTHO05D000141 4.7e-06 55.1 74 43.2
THA.LOC104824962 Tarenaya hassleriana HOM05D000220 ORTHO05D000141 4.7e-06 55.1 131 34.4
MSTRG.1943 Avicennia marina HOM05D000220 ORTHO05D000141 6.1e-06 54.7 109 35.8
BcaB01g02640 Brassica carinata HOM05D000220 ORTHO05D000141 6.1e-06 54.7 60 41.7
BcaB01g02910 Brassica carinata HOM05D000220 ORTHO05D000141 6.1e-06 54.7 120 39.2
A03p29720 Brassica napus HOM05D000220 ORTHO05D000141 6.1e-06 54.7 60 41.7
BraA03t12165Z Brassica rapa HOM05D000220 ORTHO05D000141 6.1e-06 54.7 60 41.7
CSS0006549 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 6.1e-06 54.7 151 32.5
CSS0030451 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 6.1e-06 54.7 151 32.5
CsaV3_5G004080 Cucumis sativus L. HOM05D000220 ORTHO05D000141 6.1e-06 54.7 87 41.4
DCAR_028072 Daucus carota HOM05D000220 ORTHO05D000141 6.1e-06 54.7 96 36.5
ECA233G0300 Erigeron canadensis HOM05D000220 ORTHO05D000141 6.1e-06 54.7 91 40.7
Eucgr.E00448 Eucalyptus grandis HOM05D000220 ORTHO05D000141 6.1e-06 54.7 103 37.9
Thhalv10001680m.g Eutrema salsugineum HOM05D000220 ORTHO05D000141 6.1e-06 54.7 108 39.8
Lj4g0009318 Lotus japonicus HOM05D000220 ORTHO05D000141 6.1e-06 54.7 71 46.5
Potri.006G008500 Populus trichocarpa HOM05D000220 ORTHO05D000141 6.1e-06 54.7 53 47.2
Sabra06G0006500 Salix brachista HOM05D000220 ORTHO05D000141 6.1e-06 54.7 53 45.3
THA.LOC104806334 Tarenaya hassleriana HOM05D000220 ORTHO05D000141 6.1e-06 54.7 67 46.3
THA.LOC104817224 Tarenaya hassleriana HOM05D000220 ORTHO05D000141 6.1e-06 54.7 109 33.0
Actinidia21949 Actinidia chinensis HOM05D000220 ORTHO05D000141 8.0e-06 54.3 60 43.3
arahy.Tifrunner.gnm1.ann1.MH038J Arachis hypogaea HOM05D000220 ORTHO05D000141 8.0e-06 54.3 71 39.4
EL10Ac5g13027 Beta vulgaris HOM05D000220 ORTHO05D000141 8.0e-06 54.3 132 34.1
EL10Ac5g13028 Beta vulgaris HOM05D000220 ORTHO05D000141 8.0e-06 54.3 132 34.1
EL10Ac5g13029 Beta vulgaris HOM05D000220 ORTHO05D000141 8.0e-06 54.3 132 34.1
CAN.G1217.4 Capsicum annuum HOM05D000220 ORTHO05D000141 8.0e-06 54.3 87 39.1
Cpa.g.sc8.262 Carica papaya HOM05D000220 ORTHO05D000141 8.0e-06 54.3 53 47.2
Ca_25928_v3 Cicer arietinum L. HOM05D000220 ORTHO05D000141 8.0e-06 54.3 63 46.0
COL.COLO4_12500 Corchorus olitorius HOM05D000220 ORTHO05D000141 8.0e-06 54.3 114 36.0
COL.COLO4_12501 Corchorus olitorius HOM05D000220 ORTHO05D000141 8.0e-06 54.3 114 36.0
DCAR_004935 Daucus carota HOM05D000220 ORTHO05D000141 8.0e-06 54.3 119 34.5
Thhalv10029036m.g Eutrema salsugineum HOM05D000220 ORTHO05D000141 8.0e-06 54.3 60 41.7
Glyma.05G057400 Glycine max HOM05D000220 ORTHO05D000141 8.0e-06 54.3 120 37.5
Glyma.20G062700 Glycine max HOM05D000220 ORTHO05D000141 8.0e-06 54.3 73 41.1
Lj3g0025462 Lotus japonicus HOM05D000220 ORTHO05D000141 8.0e-06 54.3 117 38.5
Potri.006G008300 Populus trichocarpa HOM05D000220 ORTHO05D000141 8.0e-06 54.3 53 47.2
SalBow3G4123 Salvia bowleyana HOM05D000220 ORTHO05D000141 8.0e-06 54.3 68 41.2
Sp4g27230 Schrenkiella parvula HOM05D000220 ORTHO05D000141 8.0e-06 54.3 107 40.2
SpUn0031_0090 Schrenkiella parvula HOM05D000220 ORTHO05D000141 8.0e-06 54.3 107 40.2
VMungo0251G3687 Vigna mungo HOM05D000220 ORTHO05D000141 8.0e-06 54.3 102 35.3


User provided reference genes

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