Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.4e-150 536.6 329 100.0
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.5e-101 372.1 295 76.6
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 8.4e-92 341.3 301 67.4
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 6.0e-82 308.5 289 60.2
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 3.3e-80 302.8 302 59.3
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.3e-80 302.8 301 56.8
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.7e-79 299.3 292 57.5
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 6.3e-79 298.5 299 60.2
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 9.0e-78 294.7 285 58.6
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.5e-77 293.9 306 56.2
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.5e-77 293.9 293 59.4
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.9e-76 289.7 308 55.2
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.9e-76 289.7 308 55.2
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 6.5e-76 288.5 300 56.7
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 8.5e-76 288.1 305 55.7
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.1e-74 283.5 284 58.5
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.0e-73 281.2 299 55.2
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.4e-73 280.8 302 56.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-73 280.0 309 55.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 3.9e-73 279.3 310 54.5
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 4.3e-72 275.8 298 55.0
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.7e-71 273.9 291 54.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.2e-71 273.5 303 56.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.2e-71 273.5 282 55.7
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.2e-71 273.5 303 56.1
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.8e-71 273.1 293 54.6
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.4e-70 270.8 299 54.5
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.4e-70 270.0 293 54.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 4.1e-70 269.2 320 51.6
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 9.1e-70 268.1 293 53.9
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.6e-69 266.5 295 54.9
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.9e-68 263.1 297 54.2
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 3.8e-68 262.7 307 54.4
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 5.0e-68 262.3 300 53.3
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 6.5e-68 261.9 296 55.1
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 8.5e-68 261.5 284 55.6
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.1e-67 261.2 291 53.6
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.5e-67 260.0 305 55.1
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.2e-67 259.6 303 54.8
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 9.4e-67 258.1 297 53.5
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 9.4e-67 258.1 291 53.3
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-66 257.7 299 54.5
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.1e-66 256.9 296 53.7
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.7e-66 256.5 296 55.7
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.7e-66 256.5 296 55.4
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.7e-66 256.5 297 53.2
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 6.1e-66 255.4 290 53.4
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.0e-65 254.6 241 57.7
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.0e-65 254.6 296 55.1
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.0e-65 254.6 296 55.1
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-65 254.2 296 55.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.8e-65 253.8 302 52.0
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.8e-65 253.8 292 52.1
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 3.9e-65 252.7 290 55.2
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 5.1e-65 252.3 301 52.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.1e-65 252.3 296 55.1
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 8.8e-65 251.5 310 51.6
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.1e-64 251.1 311 51.8
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.0e-64 250.4 297 52.2
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.3e-64 249.6 305 51.5
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 4.4e-64 249.2 287 53.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 5.7e-64 248.8 311 52.1
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 7.4e-64 248.4 266 53.8
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.7e-63 247.3 293 51.9
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 4.1e-62 242.7 303 51.2
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 5.3e-62 242.3 306 52.3
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 5.3e-62 242.3 306 52.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.3e-62 242.3 287 55.1
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 9.1e-62 241.5 294 52.0
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.4e-61 239.6 298 51.3
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 5.9e-61 238.8 307 50.5
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.0e-60 238.0 299 50.2
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.0e-60 238.0 291 51.2
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.7e-60 237.3 298 51.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-60 236.5 310 48.7
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.9e-60 236.5 302 52.0
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 3.8e-60 236.1 300 47.0
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 6.5e-60 235.3 308 47.1
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.5e-59 233.4 303 51.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 2.5e-59 233.4 294 48.6
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 4.2e-59 232.6 294 49.7
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.2e-59 232.6 294 52.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 5.5e-59 232.3 304 51.0
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 5.5e-59 232.3 268 53.0
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.2e-58 231.1 308 48.7
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.1e-58 230.3 295 51.9
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.7e-58 229.9 278 50.7
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 3.6e-58 229.6 302 50.7
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.4e-57 227.6 274 53.3
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 8.8e-57 224.9 290 50.7
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.1e-56 224.6 297 50.8
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.5e-56 224.2 298 48.7
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.6e-56 223.4 290 49.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 7.4e-56 221.9 289 49.8
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 7.4e-56 221.9 295 51.5
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.4e-56 221.9 296 49.7
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 9.7e-56 221.5 230 55.7
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 9.7e-56 221.5 146 76.0
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.3e-55 221.1 185 65.9
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.3e-55 221.1 301 49.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.7e-55 220.7 256 52.0
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.7e-55 219.5 309 48.5
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 4.8e-55 219.2 310 47.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 6.3e-55 218.8 299 49.2
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 6.3e-55 218.8 297 48.5
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 8.2e-55 218.4 304 46.7
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.1e-54 218.0 295 48.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-54 218.0 227 55.5
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.1e-54 218.0 307 49.8
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 4.1e-54 216.1 299 48.5
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.2e-53 214.5 205 57.6
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.6e-53 214.2 290 49.3
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.0e-53 213.8 295 46.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.0e-53 213.8 300 48.7
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.6e-53 213.4 303 48.5
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 4.5e-53 212.6 308 47.7
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.5e-53 212.6 275 50.9
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 4.5e-53 212.6 300 47.0
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 5.9e-53 212.2 310 48.4
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.0e-52 211.5 286 47.6
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.7e-52 210.7 297 48.8
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.9e-52 209.9 298 50.7
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.9e-52 209.9 301 47.8
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.5e-51 207.6 299 49.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.9e-51 207.2 301 45.5
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 8.0e-50 201.8 338 43.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 8.0e-50 201.8 277 48.7
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.3e-49 200.3 151 68.2
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.7e-49 198.7 243 53.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.4e-46 190.3 286 46.5
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 4.1e-46 189.5 306 43.5
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 5.3e-46 189.1 124 71.0
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.9e-44 183.3 142 66.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 9.4e-43 178.3 307 42.0
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.1e-42 177.2 292 41.8
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.0e-41 174.9 286 40.9
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.4e-40 169.5 254 47.6
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.7e-39 166.4 131 64.9
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.8e-39 166.0 139 62.6
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.1e-38 164.9 180 50.0
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.4e-38 162.5 287 43.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 2.7e-37 160.2 298 41.6
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.9e-35 154.1 125 60.8
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.6e-34 151.0 119 62.2
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.0e-33 146.7 287 38.3
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.8e-31 140.2 127 56.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.1e-30 138.3 295 36.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.4e-30 137.9 121 57.0
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.4e-30 137.1 127 55.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.9e-28 130.2 272 37.1
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.4e-24 116.3 125 45.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.1e-22 109.8 75 70.7
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 2.0e-16 90.9 167 43.1
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 5.8e-16 89.4 127 44.9
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-15 88.2 138 52.2
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 3.5e-13 80.1 131 48.9
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 2.5e-11 73.9 175 40.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.3e-11 72.4 108 48.1
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.4e-09 68.2 111 43.2
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 4.0e-09 66.6 52 61.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.4e-06 57.4 46 58.7


User provided reference genes

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