Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 9.3e-80 300.1 143 100.0
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 1.4e-64 249.6 141 84.4
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.2e-64 248.1 141 84.4
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.2e-64 248.1 141 84.4
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.7e-63 244.6 141 83.7
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 8.0e-63 243.8 141 81.6
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.3e-62 242.3 139 81.3
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.7e-60 236.1 139 79.9
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 3.1e-59 231.9 139 77.7
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 3.1e-59 231.9 139 78.4
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 5.3e-59 231.1 139 77.7
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 5.3e-59 231.1 139 77.7
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.6e-58 229.6 139 77.7
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.0e-58 229.2 139 78.4
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.5e-58 228.4 139 77.7
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 5.9e-58 227.6 140 77.9
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 5.9e-58 227.6 139 75.5
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.3e-57 226.5 139 75.5
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.7e-57 226.1 136 78.7
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 2.2e-57 225.7 139 76.3
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 2.2e-57 225.7 139 76.3
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.5e-57 224.2 139 77.0
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 8.5e-57 223.8 141 76.6
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 8.5e-57 223.8 141 76.6
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.1e-56 223.4 139 74.8
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 139 76.3
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 139 72.7
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 2.5e-56 222.2 139 76.3
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 3.2e-56 221.9 139 77.7
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 4.2e-56 221.5 141 75.2
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.5e-56 221.1 139 75.5
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.5e-56 221.1 139 75.5
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 5.5e-56 221.1 141 75.9
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 7.2e-56 220.7 139 77.0
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.2e-55 219.9 139 77.7
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.6e-55 219.5 139 71.9
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.6e-55 219.5 139 71.9
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.6e-55 219.5 139 77.0
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 2.7e-55 218.8 141 74.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.7e-55 218.8 139 75.5
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 4.7e-55 218.0 139 76.3
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.1e-55 217.6 139 76.3
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 6.1e-55 217.6 139 77.0
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 8.0e-55 217.2 139 75.5
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 8.0e-55 217.2 139 72.7
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.0e-54 216.9 139 74.8
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 1.0e-54 216.9 139 74.1
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.4e-54 216.5 139 70.5
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.8e-54 216.1 139 75.5
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-54 215.3 136 75.7
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-54 215.3 136 75.7
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 3.0e-54 215.3 136 72.8
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 3.0e-54 215.3 139 75.5
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.0e-54 214.9 141 73.8
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 5.2e-54 214.5 139 71.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 5.2e-54 214.5 139 74.1
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 8.8e-54 213.8 139 71.2
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 8.8e-54 213.8 139 70.5
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.2e-53 213.4 139 69.8
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 1.2e-53 213.4 139 71.2
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.5e-53 213.0 139 71.9
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.0e-53 212.6 139 70.5
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.6e-53 212.2 136 74.3
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 2.6e-53 212.2 139 73.4
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 5.7e-53 211.1 139 72.7
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.5e-53 210.7 139 69.8
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 9.7e-53 210.3 134 74.6
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.7e-52 209.5 139 69.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.8e-52 208.8 139 67.6
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 4.8e-52 208.0 139 68.3
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.8e-52 208.0 140 70.0
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.8e-52 208.0 139 69.8
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 4.8e-52 208.0 136 70.6
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 8.2e-52 207.2 139 69.1
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 8.2e-52 207.2 139 69.1
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 8.2e-52 207.2 139 69.1
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 8.2e-52 207.2 139 69.8
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 69.5
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-51 205.3 139 67.6
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-51 205.3 139 67.6
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 3.1e-51 205.3 139 67.6
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 3.1e-51 205.3 139 67.6
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.1e-51 204.9 139 68.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.1e-51 204.9 139 68.3
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 4.1e-51 204.9 139 71.2
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 4.1e-51 204.9 139 70.5
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 5.3e-51 204.5 139 67.6
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 5.3e-51 204.5 139 67.6
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 5.3e-51 204.5 139 67.6
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.3e-51 204.5 136 69.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 9.1e-51 203.8 131 74.0
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 9.1e-51 203.8 140 71.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.2e-50 203.4 131 71.8
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.2e-50 203.4 139 68.3
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.6e-50 203.0 140 70.7
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 2.0e-50 202.6 139 66.9
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 2.0e-50 202.6 130 73.8
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 2.7e-50 202.2 136 70.6
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-50 202.2 139 66.9
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 2.7e-50 202.2 139 66.9
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 7.7e-50 200.7 139 68.3
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 1.0e-49 200.3 139 66.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 1.0e-49 200.3 135 71.9
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.3e-49 199.9 132 74.2
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.3e-49 199.9 130 73.8
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.7e-49 199.5 140 69.3
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.7e-49 199.5 139 68.3
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.7e-49 199.5 139 66.9
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.2e-49 199.1 140 70.7
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.9e-49 198.7 139 68.3
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 3.8e-49 198.4 135 71.1
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 3.8e-49 198.4 153 64.7
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 5.0e-49 198.0 137 68.6
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.9e-48 196.1 190 55.3
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.9e-48 196.1 190 55.3
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.9e-48 196.1 140 69.3
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 4.2e-48 194.9 154 63.0
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 7.2e-48 194.1 140 69.3
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 7.2e-48 194.1 135 68.1
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.2e-47 193.4 140 68.6
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 1.6e-47 193.0 144 67.4
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.7e-47 192.2 135 67.4
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.7e-47 192.2 141 66.0
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 4.7e-47 191.4 134 69.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 8.0e-47 190.7 135 68.9
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 8.0e-47 190.7 139 64.7
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.0e-46 190.3 144 67.4
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.4e-46 189.9 188 51.1
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.8e-46 189.5 134 65.7
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 3.0e-46 188.7 144 64.6
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.0e-46 188.7 167 56.9
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 8.8e-46 187.2 135 67.4
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.5e-45 186.4 138 69.6
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.7e-44 183.0 139 65.5
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 8.3e-44 180.6 138 65.2
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.4e-43 179.9 116 75.0
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.7e-42 174.1 139 61.9
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 7.7e-42 174.1 137 61.3
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.7e-41 172.9 172 54.1
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.1e-40 170.2 141 60.3
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.5e-40 169.9 139 59.0
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.2e-40 168.3 137 61.3
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 4.2e-40 168.3 142 63.4
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.8e-39 165.6 107 74.8
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 4.0e-38 161.8 128 61.7
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-37 160.2 131 58.8
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.5e-37 157.5 131 58.0
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.9e-36 154.8 134 56.0
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.1e-35 153.7 134 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 2.7e-34 149.1 137 52.6
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.5e-34 148.3 136 56.6
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 6.6e-33 144.4 280 35.0
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 9.5e-32 140.6 141 51.1
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 3.4e-29 132.1 127 49.6
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 3.7e-28 128.6 126 50.8
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 5.0e-25 118.2 71 74.6
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.1e-22 110.5 79 65.8
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 2.3e-22 109.4 79 65.8
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-21 106.7 103 53.4
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-21 106.7 103 53.4
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-21 106.7 103 53.4
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.8e-21 104.8 73 68.5
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.4e-19 100.1 65 67.7
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.2e-18 97.1 65 67.7
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.6e-18 96.7 164 40.2
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 2.7e-18 95.9 73 63.0
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.0e-17 94.0 59 72.9
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.0e-17 94.0 59 72.9
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 3.0e-17 92.4 121 43.8
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 3.3e-16 89.0 117 43.6
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 4.0e-14 82.0 118 36.4
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 5.8e-13 78.2 67 59.7
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 7.5e-13 77.8 67 58.2
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 9.9e-13 77.4 118 43.2
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.0e-09 67.4 121 40.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 3.9e-09 65.5 105 35.2
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.9e-08 63.2 39 66.7
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 6.2e-07 58.2 45 60.0
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 8.1e-07 57.8 32 75.0
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 8.1e-07 57.8 42 64.3
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 1.1e-06 57.4 71 45.1
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 2.4e-06 56.2 32 75.0
TAR381G1165 Trochodendron aralioides HOM05D000503 ORTHO05D000361 2.4e-06 56.2 94 40.4
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.0e-06 55.5 47 59.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 5.2e-06 55.1 32 71.9
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 8.9e-06 54.3 43 55.8
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 8.9e-06 54.3 63 46.0


User provided reference genes

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