Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.5e-65 252.7 125 100.0
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 3.2e-60 235.0 123 93.5
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.5e-60 234.2 123 92.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 4.7e-59 231.1 125 91.2
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.4e-55 219.5 125 84.0
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.6e-51 206.1 114 82.5
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 3.0e-50 201.8 118 81.4
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 6.7e-50 200.7 121 81.8
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 3.7e-48 194.9 125 75.2
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 8.2e-48 193.7 116 77.6
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 1.1e-47 193.4 125 75.2
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 1.4e-47 193.0 121 76.9
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 1.4e-47 193.0 122 74.6
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.4e-47 193.0 124 74.2
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 2.4e-47 192.2 124 74.2
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.1e-47 191.8 118 76.3
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 4.1e-47 191.4 118 77.1
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 4.1e-47 191.4 124 74.2
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.1e-47 191.4 124 74.2
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 4.1e-47 191.4 125 73.6
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 5.3e-47 191.0 130 72.3
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 5.3e-47 191.0 118 76.3
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 5.3e-47 191.0 118 76.3
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 5.3e-47 191.0 117 76.9
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 9.1e-47 190.3 124 73.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 9.1e-47 190.3 124 73.4
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 9.1e-47 190.3 116 75.9
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.2e-46 189.9 120 76.7
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.2e-46 189.9 118 77.1
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 1.2e-46 189.9 125 73.6
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.6e-46 189.5 125 72.0
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.6e-46 189.5 122 73.8
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 2.0e-46 189.1 116 78.4
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 2.0e-46 189.1 127 74.0
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 2.0e-46 189.1 125 69.6
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.0e-46 189.1 125 72.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 2.7e-46 188.7 125 73.6
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 3.5e-46 188.3 125 71.2
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 4.5e-46 188.0 130 70.0
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 4.5e-46 188.0 125 72.8
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 5.9e-46 187.6 112 75.9
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.0e-45 186.8 118 75.4
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.3e-45 186.4 118 74.6
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.7e-45 186.0 118 73.7
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.2e-45 185.7 118 73.7
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.2e-45 185.7 118 73.7
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.2e-45 185.7 118 73.7
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 2.2e-45 185.7 125 72.0
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 2.2e-45 185.7 118 75.4
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.9e-45 185.3 125 70.4
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 2.9e-45 185.3 123 70.7
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 2.9e-45 185.3 123 70.7
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 2.9e-45 185.3 141 63.8
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 3.8e-45 184.9 122 73.0
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 5.0e-45 184.5 118 73.7
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 5.0e-45 184.5 112 75.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 6.5e-45 184.1 118 73.7
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 8.5e-45 183.7 116 75.0
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.1e-44 183.3 113 78.8
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 1.5e-44 183.0 118 73.7
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 1.5e-44 183.0 118 73.7
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 1.5e-44 183.0 118 73.7
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.5e-44 183.0 125 69.6
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.5e-44 183.0 124 71.0
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.5e-44 183.0 121 72.7
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.5e-44 183.0 125 72.0
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.5e-44 183.0 125 72.0
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 1.9e-44 182.6 118 72.9
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 4.2e-44 181.4 122 71.3
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 4.2e-44 181.4 116 73.3
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 4.2e-44 181.4 116 71.6
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 4.2e-44 181.4 112 75.9
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 5.5e-44 181.0 118 72.0
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 5.5e-44 181.0 118 72.0
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 5.5e-44 181.0 116 72.4
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.5e-44 181.0 125 70.4
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 7.2e-44 180.6 118 71.2
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 7.2e-44 180.6 121 71.1
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 9.4e-44 180.3 125 68.8
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 9.4e-44 180.3 142 64.1
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 9.4e-44 180.3 121 70.2
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.2e-43 179.9 118 71.2
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 1.6e-43 179.5 125 69.6
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.6e-43 179.5 112 73.2
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 2.1e-43 179.1 112 75.0
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.7e-43 178.7 125 68.8
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 2.7e-43 178.7 122 73.0
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 2.7e-43 178.7 114 74.6
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 4.7e-43 177.9 125 69.6
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 4.7e-43 177.9 125 69.6
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 4.7e-43 177.9 114 71.1
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 6.1e-43 177.6 122 68.9
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 6.1e-43 177.6 122 68.9
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.0e-42 176.8 125 68.8
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 1.8e-42 176.0 115 73.0
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 4.0e-42 174.9 124 70.2
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 6.8e-42 174.1 125 67.2
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 8.8e-42 173.7 120 70.0
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.5e-41 172.9 121 71.1
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.5e-41 172.9 125 66.4
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.5e-41 172.9 125 66.4
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 2.0e-41 172.6 119 68.1
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 4.4e-41 171.4 123 67.5
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 5.7e-41 171.0 136 61.8
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 7.5e-41 170.6 146 61.0
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 2.8e-40 168.7 114 70.2
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.6e-27 126.3 86 72.1
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 2.6e-25 119.0 81 72.8
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 4.1e-23 111.7 66 74.2
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 7.8e-22 107.5 128 45.3
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.9e-20 102.8 73 63.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.9e-20 102.8 66 65.2
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 2.5e-20 102.4 73 61.6
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 7.3e-20 100.9 72 59.7
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 9.5e-20 100.5 66 66.7
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.2e-19 100.1 66 65.2
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.2e-19 100.1 66 65.2
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.6e-19 99.8 106 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 2.1e-19 99.4 106 43.4
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.1e-19 99.4 77 58.4
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 3.6e-19 98.6 60 71.7
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.3e-18 95.9 57 70.2
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 5.2e-18 94.7 77 66.2
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 5.2e-18 94.7 57 80.7
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 6.8e-18 94.4 56 83.9
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.2e-17 93.6 58 79.3
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 9.8e-17 90.5 108 40.7
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 1.7e-16 89.7 60 71.7
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.7e-16 89.7 58 74.1
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 3.7e-16 88.6 71 62.0
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 4.9e-16 88.2 57 73.7
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 1.2e-14 83.6 65 60.0
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 6.0e-14 81.3 54 72.2
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 1.3e-13 80.1 121 38.0
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 8.6e-13 77.4 57 64.9
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 1.1e-12 77.0 51 72.5
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 1.1e-12 77.0 51 72.5
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 4.3e-12 75.1 47 76.6
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 4.3e-12 75.1 51 70.6
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 5.6e-12 74.7 108 40.7
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 9.2e-07 57.4 46 54.3
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 4.6e-06 55.1 55 54.5


User provided reference genes

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