Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 0.0e+00 1117.8 682 100.0
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.4e-281 971.5 686 84.3
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 2.0e-276 955.7 682 79.2
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.0e-276 955.7 686 82.2
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 8.5e-272 940.3 685 76.2
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.6e-270 936.0 685 76.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.6e-270 936.0 685 78.0
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.3e-267 926.4 685 74.7
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.2e-267 925.6 685 75.3
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 4.5e-265 917.9 684 74.7
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.9e-264 915.2 683 74.1
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 8.5e-264 913.7 683 74.1
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 8.5e-264 913.7 682 74.5
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 2.5e-263 912.1 675 74.5
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 9.4e-263 910.2 668 77.1
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.6e-262 909.4 679 74.1
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 4.7e-262 907.9 685 73.6
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 8.0e-262 907.1 675 75.1
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 3.0e-261 905.2 684 73.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 5.2e-261 904.4 686 72.2
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 6.7e-261 904.0 682 72.7
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.5e-260 902.9 669 75.5
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.5e-260 902.9 684 73.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.0e-260 902.5 746 68.9
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.0e-260 902.5 746 68.9
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.3e-260 901.7 686 73.3
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 3.3e-260 901.7 682 73.8
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.4e-260 901.4 669 75.3
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 5.7e-260 901.0 687 73.1
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 9.7e-260 900.2 690 71.9
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.3e-259 899.8 687 73.5
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.7e-259 899.4 669 75.3
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 3.7e-259 898.3 689 71.8
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 3.7e-259 898.3 668 74.1
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 4.8e-259 897.9 679 75.6
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 6.3e-259 897.5 675 74.5
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 8.2e-259 897.1 685 73.0
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.1e-258 896.7 655 75.7
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.4e-258 896.3 653 77.5
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 3.1e-258 895.2 684 73.7
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 2.0e-257 892.5 669 75.3
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 2.7e-257 892.1 692 71.7
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 2.2e-256 889.0 687 72.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.1e-255 886.7 675 73.2
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 3.2e-255 885.2 686 71.4
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 5.5e-255 884.4 664 73.8
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 9.4e-255 883.6 664 73.5
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.2e-254 883.2 675 73.6
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.2e-254 883.2 669 77.4
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 3.6e-254 881.7 675 73.5
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 6.1e-254 880.9 689 71.7
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 8.0e-254 880.6 687 72.3
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.4e-253 879.8 691 71.6
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 1.4e-253 879.8 687 71.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 3.0e-253 878.6 665 73.5
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 8.8e-253 877.1 666 72.8
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 3.4e-252 875.2 685 71.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 9.8e-252 873.6 685 71.8
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 4.8e-251 871.3 682 72.3
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 2.4e-250 869.0 699 71.8
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.6e-249 866.3 679 71.6
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.6e-249 866.3 679 71.7
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 4.5e-249 864.8 687 70.9
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 5.9e-249 864.4 671 72.0
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.0e-248 863.6 679 71.4
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 2.3e-248 862.4 693 69.7
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 6.6e-248 860.9 676 70.9
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 6.6e-248 860.9 674 72.6
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 4.2e-247 858.2 637 76.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 9.5e-247 857.1 670 74.3
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.4e-245 853.2 660 73.9
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.2e-244 850.1 685 74.9
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 7.5e-244 847.4 685 73.6
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 9.8e-244 847.0 676 70.6
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.2e-243 845.9 689 69.5
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.8e-243 845.5 676 70.4
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 6.3e-243 844.3 687 70.2
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.8e-242 842.8 672 70.4
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-241 839.7 674 71.4
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.6e-241 839.7 674 71.4
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.7e-241 839.0 679 70.3
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.3e-240 835.9 728 66.6
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 2.9e-240 835.5 669 69.8
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.1e-239 833.6 616 77.3
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-239 833.2 714 66.1
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.5e-239 833.2 679 69.5
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.5e-239 832.4 704 66.5
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.5e-239 832.4 675 69.6
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.5e-239 832.4 683 69.0
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 9.5e-239 830.5 686 69.0
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.2e-238 830.1 673 69.1
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.6e-238 829.7 664 72.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 2.8e-238 828.9 664 68.7
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.0e-237 827.0 676 69.4
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 8.9e-237 823.9 693 69.0
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 8.3e-235 817.4 648 72.5
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.9e-234 816.2 706 66.6
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.6e-233 813.1 654 70.6
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.3e-227 790.8 733 64.3
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 5.4e-226 788.1 653 69.5
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 2.7e-225 785.8 683 68.1
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 6.0e-225 784.6 1035 49.5
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.0e-224 783.9 665 66.0
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.3e-224 782.7 663 67.1
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 7.3e-223 777.7 573 75.7
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 3.4e-220 768.8 659 66.9
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.5e-220 767.7 718 63.4
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 3.2e-218 762.3 609 71.1
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 7.8e-217 757.7 652 67.0
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 4.3e-215 751.9 670 64.9
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.2e-212 743.8 690 63.8
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.4e-211 738.0 719 61.8
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 3.9e-208 728.8 665 66.2
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 5.6e-199 698.4 651 61.1
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 6.2e-190 668.3 652 59.0
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 6.9e-189 664.8 656 57.9
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 2.8e-182 642.9 703 57.2
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.0e-179 634.4 552 66.7
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 2.7e-153 546.6 681 51.7
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 8.0e-145 518.5 352 78.7
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.0e-135 487.3 424 66.7
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.0e-133 478.8 342 73.1
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.6e-132 477.6 401 68.3
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.1e-114 418.3 570 48.2
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 3.1e-80 303.9 404 51.2
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 9.9e-79 298.9 499 43.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 5.1e-75 286.6 508 42.5
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 4.3e-74 283.5 728 35.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.1e-65 254.6 269 57.6
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.9e-51 207.2 561 33.2
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 9.1e-48 196.1 129 79.1
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.4e-47 194.1 126 81.0
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 5.0e-46 190.3 185 60.0
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 8.5e-46 189.5 157 66.9
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.3e-38 165.6 94 88.3
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 3.5e-31 141.0 775 26.3
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 3.7e-25 120.9 600 24.7
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.8e-22 110.9 667 25.9
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.2e-18 99.4 93 63.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.3e-14 85.9 71 66.2
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.9e-13 82.0 203 39.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 3.3e-13 81.3 77 63.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 9.5e-13 79.7 725 21.4
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 3.6e-12 77.8 50 86.0
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 8.3e-09 66.6 49 75.5
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.8e-08 65.5 50 78.0
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 5.4e-08 63.9 54 64.8
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 5.9e-07 60.5 245 21.2
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 7.8e-07 60.1 28 100.0


User provided reference genes

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