Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 5.6e-193 677.6 371 100.0
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 9.4e-140 500.7 373 71.3
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 1.2e-134 483.8 375 76.3
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 7.0e-119 431.4 374 63.6
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 4.5e-118 428.7 375 64.0
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 7.7e-118 427.9 375 64.0
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 5.5e-116 421.8 375 68.5
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 7.2e-116 421.4 375 68.5
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.7e-115 419.5 366 69.7
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 4.7e-115 418.7 374 65.2
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 8.0e-115 417.9 363 63.1
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 2.3e-114 416.4 374 66.0
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 3.0e-114 416.0 375 68.3
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 5.2e-114 415.2 378 64.0
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 3.4e-113 412.5 368 63.0
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 1.3e-112 410.6 368 60.9
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.7e-112 410.2 372 62.1
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 3.7e-112 409.1 373 64.3
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 4.8e-112 408.7 376 66.2
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 6.3e-112 408.3 368 67.1
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 1.1e-111 407.5 364 64.3
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.4e-111 407.1 376 60.4
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.8e-111 406.8 356 64.9
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.8e-111 406.8 374 66.6
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 3.1e-111 406.0 374 66.8
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 4.1e-111 405.6 374 62.3
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 5.4e-111 405.2 364 66.2
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.2e-110 404.1 374 66.0
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 2.7e-110 402.9 372 60.5
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 4.5e-110 402.1 373 66.2
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.9e-110 401.7 374 61.5
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 1.0e-109 401.0 372 64.5
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 1.0e-109 401.0 367 66.2
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 3.8e-109 399.1 373 66.0
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 5.0e-109 398.7 365 61.1
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 6.5e-109 398.3 372 60.2
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 1.1e-108 397.5 379 65.4
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 1.9e-108 396.7 379 56.7
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 2.5e-108 396.4 372 60.2
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 2.5e-108 396.4 364 65.4
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 5.5e-108 395.2 371 64.4
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 9.4e-108 394.4 361 66.8
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 9.4e-108 394.4 352 68.2
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.2e-107 394.0 354 58.2
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.2e-107 394.0 352 61.1
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.2e-107 394.0 368 64.7
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 1.2e-107 394.0 374 66.6
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.6e-107 393.7 362 62.2
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 3.6e-107 392.5 354 57.6
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 3.6e-107 392.5 352 66.2
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 4.7e-107 392.1 371 66.3
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 8.0e-107 391.3 371 59.3
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 8.0e-107 391.3 371 61.7
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 8.0e-107 391.3 372 59.1
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 8.0e-107 391.3 367 61.0
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 1.8e-106 390.2 371 58.2
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.3e-106 389.8 352 60.8
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 3.0e-106 389.4 368 66.3
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 5.2e-106 388.7 363 57.9
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.5e-105 387.1 351 66.7
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.5e-105 387.1 351 67.0
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 2.6e-105 386.3 359 65.2
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 4.4e-105 385.6 358 60.6
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 4.4e-105 385.6 371 60.6
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 5.7e-105 385.2 353 61.8
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 5.7e-105 385.2 362 66.0
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 7.5e-105 384.8 358 64.8
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 7.5e-105 384.8 359 59.3
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 7.5e-105 384.8 367 57.8
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 9.8e-105 384.4 372 62.4
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.7e-104 383.6 409 54.0
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 2.2e-104 383.3 343 65.6
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 3.7e-104 382.5 358 65.1
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 3.7e-104 382.5 356 61.8
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 3.7e-104 382.5 356 61.8
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.7e-104 382.5 372 58.6
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 4.9e-104 382.1 358 65.4
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 4.9e-104 382.1 358 65.4
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 4.9e-104 382.1 372 58.6
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 6.3e-104 381.7 372 58.9
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.1e-103 380.9 374 59.6
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 2.4e-103 379.8 363 59.8
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 2.4e-103 379.8 360 65.8
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 4.1e-103 379.0 356 62.6
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 4.1e-103 379.0 363 58.7
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 4.1e-103 379.0 363 58.7
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 4.1e-103 379.0 361 57.9
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 2.0e-102 376.7 362 64.4
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 2.0e-102 376.7 354 60.7
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 2.7e-102 376.3 362 64.6
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 3.5e-102 375.9 364 57.4
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 5.0e-101 372.1 352 64.5
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 8.6e-101 371.3 366 63.9
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 1.5e-100 370.5 372 58.1
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.9e-100 370.2 352 61.6
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 7.3e-100 368.2 356 64.3
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.2e-99 367.5 344 58.4
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.0e-98 362.5 367 57.8
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 4.0e-98 362.5 365 61.4
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 1.5e-97 360.5 362 54.7
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.6e-97 359.8 367 57.2
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.4e-97 359.4 367 57.5
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 4.4e-97 359.0 357 59.1
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.4e-97 359.0 367 57.5
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 1.3e-96 357.5 360 58.9
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 3.2e-95 352.8 352 57.7
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 2.7e-94 349.7 334 58.4
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 1.2e-91 340.9 356 54.5
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 2.1e-91 340.1 370 58.4
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.1e-91 340.1 365 58.1
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.6e-91 339.3 370 58.1
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 6.8e-90 335.1 365 57.5
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 3.4e-89 332.8 337 54.9
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.4e-87 326.6 366 53.0
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.4e-87 325.5 386 52.3
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 6.6e-85 318.5 350 50.6
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 4.3e-84 315.8 305 64.3
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 1.8e-82 310.5 349 56.2
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 2.3e-82 310.1 166 84.9
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 8.9e-82 308.1 336 52.1
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 4.4e-81 305.8 363 48.8
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 2.9e-80 303.1 348 49.1
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.2e-79 299.7 180 78.3
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 2.7e-78 296.6 335 54.6
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 7.3e-76 288.5 348 47.4
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 6.8e-74 282.0 344 46.8
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 7.6e-65 251.9 299 50.5
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 3.2e-63 246.5 142 83.1
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 3.9e-53 213.0 124 80.6
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 6.9e-50 202.2 113 79.6
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 1.3e-48 198.0 250 58.8
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 2.2e-48 197.2 256 56.6
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 2.7e-46 190.3 113 74.3
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.8e-43 180.3 172 54.1
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 3.1e-42 176.8 248 50.0
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 2.5e-39 167.2 95 81.1
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 2.4e-34 150.6 104 65.4
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 2.1e-30 137.5 234 42.3
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.2e-25 121.7 110 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 4.5e-25 119.8 265 32.1
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 4.4e-20 103.2 99 59.6
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.5e-15 86.3 52 71.2
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 1.1e-12 78.6 37 91.9
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 9.1e-10 68.9 59 54.2


User provided reference genes

Program Settings