Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.5e-154 548.1 323 100.0
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 3.0e-102 375.9 319 73.4
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 5.0e-97 358.6 313 73.8
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 6.5e-97 358.2 322 65.5
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.7e-84 317.0 313 68.1
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 4.7e-79 298.9 295 69.5
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 7.8e-66 255.0 292 58.9
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.0e-65 254.6 304 51.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 3.3e-64 249.6 323 56.7
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 9.5e-64 248.1 301 59.8
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.6e-63 247.3 309 50.5
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.1e-62 244.6 292 60.3
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 2.3e-62 243.4 307 50.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 6.8e-62 241.9 296 57.4
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.0e-61 240.4 285 59.3
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.0e-61 240.4 333 51.4
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.6e-61 240.0 307 52.8
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 3.4e-61 239.6 309 58.6
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 4.4e-61 239.2 333 50.8
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 5.8e-61 238.8 329 53.8
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.8e-61 238.8 303 58.1
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.7e-60 237.3 307 57.7
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.2e-60 236.9 286 60.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 6.4e-60 235.3 307 58.6
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.9e-59 233.8 295 52.9
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.2e-58 231.1 319 52.7
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.1e-58 230.3 323 54.2
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 3.5e-58 229.6 330 51.5
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 6.0e-58 228.8 320 47.8
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.8e-58 228.4 323 55.1
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 7.8e-58 228.4 293 57.7
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 7.8e-58 228.4 328 53.4
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.3e-57 226.9 319 56.1
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 2.5e-56 223.4 314 51.3
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.3e-56 222.6 300 53.3
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 9.5e-56 221.5 286 52.8
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.1e-54 218.0 331 44.1
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.4e-54 217.6 296 54.7
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.4e-54 216.9 300 46.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 2.4e-54 216.9 327 44.6
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 4.0e-54 216.1 285 55.4
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.2e-53 214.5 311 50.8
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.5e-53 214.2 307 46.9
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.6e-53 213.4 322 47.5
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 2.6e-53 213.4 327 44.3
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.2e-52 210.3 302 48.0
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 2.9e-52 209.9 318 49.1
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.8e-52 209.5 321 48.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 4.9e-52 209.1 324 51.5
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 8.4e-52 208.4 302 47.0
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 8.4e-52 208.4 334 48.8
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.4e-51 207.6 295 48.5
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.4e-51 207.6 309 46.3
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 3.2e-51 206.5 295 54.9
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 3.2e-51 206.5 324 50.6
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.4e-51 205.7 294 49.0
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 7.1e-51 205.3 314 44.3
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.6e-50 204.1 322 50.9
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.1e-50 203.8 283 50.9
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.7e-50 203.4 316 51.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 3.5e-50 203.0 295 46.4
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 4.6e-50 202.6 302 54.0
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.6e-50 202.6 325 48.0
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 6.0e-50 202.2 297 48.5
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.0e-50 202.2 327 49.8
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 6.0e-50 202.2 293 53.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 3.9e-49 199.5 324 51.2
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.1e-48 198.0 302 47.4
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.5e-48 197.6 326 47.5
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.9e-48 197.2 303 49.5
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 5.6e-48 195.7 268 55.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 5.6e-48 195.7 302 54.0
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.6e-47 194.1 292 49.3
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.6e-47 194.1 283 52.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 3.6e-47 193.0 286 43.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 6.2e-47 192.2 294 50.7
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.4e-46 191.0 322 44.7
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.8e-46 190.7 316 48.4
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 4.0e-46 189.5 313 41.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 6.9e-46 188.7 259 54.8
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 6.9e-46 188.7 287 51.2
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 6.9e-46 188.7 300 43.3
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.0e-45 187.2 307 41.0
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 3.4e-45 186.4 283 43.1
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 5.8e-45 185.7 243 48.6
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 9.9e-45 184.9 281 41.3
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 9.9e-45 184.9 281 41.3
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.9e-44 183.3 298 48.7
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 3.8e-44 183.0 317 43.8
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 4.9e-44 182.6 280 49.6
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 4.9e-44 182.6 458 39.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.4e-43 181.0 287 47.7
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 3.2e-43 179.9 327 42.5
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.2e-43 179.9 316 49.1
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 5.4e-43 179.1 422 37.7
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 5.1e-41 172.6 284 43.0
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 6.6e-41 172.2 314 39.5
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.5e-40 171.0 300 49.0
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 2.1e-39 167.2 264 54.9
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 3.6e-39 166.4 338 38.8
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 3.1e-38 163.3 301 40.2
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.2e-37 161.4 286 38.1
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.6e-37 160.2 306 46.4
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 4.5e-37 159.5 304 39.8
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 5.8e-37 159.1 327 41.0
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 2.9e-36 156.8 317 38.8
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.9e-36 156.8 327 37.3
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.4e-35 153.7 201 55.2
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 7.1e-35 152.1 327 37.9
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 7.9e-34 148.7 280 39.3
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.3e-33 147.1 246 44.7
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 3.0e-33 146.7 278 35.3
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.5e-32 144.4 295 38.3
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 5.6e-32 142.5 287 37.3
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.3e-31 141.4 296 41.9
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.6e-31 141.0 278 38.1
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 9.0e-30 135.2 288 37.8
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.2e-29 134.8 294 35.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.5e-29 134.4 288 36.1
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 9.9e-29 131.7 294 37.1
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.6e-26 124.4 192 41.7
Ah.07g198490 Amaranthus hybridus HOM05D042025 ORTHO05D006058 3.9e-25 119.8 100 71.0
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 5.1e-25 119.4 311 34.1
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 6.7e-25 119.0 301 35.9
Ah.07g198550 Amaranthus hybridus HOM05D042025 ORTHO05D006058 8.7e-25 118.6 74 89.2
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 4.3e-24 116.3 295 30.8
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.6e-23 114.4 297 34.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 8.2e-23 112.1 192 41.1
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.2e-21 108.2 293 33.8
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 6.5e-20 102.4 228 34.6
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-19 101.3 94 61.7
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.8e-17 94.4 191 36.1
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 5.1e-17 92.8 190 42.6
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 4.3e-16 89.7 331 32.6
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 7.4e-16 89.0 290 30.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.8e-14 84.3 272 40.8
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 6.5e-12 75.9 87 54.0
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 5.5e-11 72.8 88 47.7
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.2e-11 72.4 46 76.1
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.1e-10 70.9 46 71.7
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.7e-10 70.5 62 58.1
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 7.9e-10 68.9 315 30.5
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.4e-09 68.2 75 52.0
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 3.0e-09 67.0 81 48.1
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 3.9e-09 66.6 114 38.6
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.1e-08 65.1 111 38.7
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 1.3e-07 61.6 92 44.6
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 2.2e-07 60.8 49 63.3
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 6.3e-07 59.3 358 26.0
Ah.07g198540 Amaranthus hybridus HOM05D042025 ORTHO05D006058 3.1e-06 57.0 37 86.5


User provided reference genes

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