Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.0e-185 653.3 335 100.0
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 9.5e-91 337.8 281 65.5
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.0e-85 320.1 307 59.6
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.4e-78 297.4 292 57.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.1e-65 254.6 304 50.0
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.7e-63 247.3 265 53.6
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.8e-63 246.1 291 49.8
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 3.2e-62 243.0 295 48.8
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.2e-61 241.1 291 49.5
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 8.7e-60 235.0 282 51.4
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.6e-58 229.6 298 46.3
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 6.9e-57 225.3 291 48.1
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 2.6e-56 223.4 295 47.8
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 3.4e-56 223.0 300 47.0
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 4.4e-56 222.6 303 46.2
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 4.4e-56 222.6 300 46.3
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 7.6e-56 221.9 305 45.2
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 3.8e-55 219.5 295 46.4
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 8.4e-55 218.4 295 45.4
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 8.4e-55 218.4 293 46.4
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 8.4e-55 218.4 286 46.9
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.1e-54 218.0 293 45.7
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 1.1e-54 218.0 283 47.3
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 3.2e-54 216.5 264 47.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 3.2e-54 216.5 285 44.9
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.2e-54 216.1 285 47.4
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 4.2e-54 216.1 311 44.7
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 7.1e-54 215.3 285 47.7
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 9.3e-54 214.9 295 45.4
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.2e-53 214.5 295 45.4
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.2e-53 214.5 263 48.3
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 1.6e-53 214.2 285 47.0
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.7e-53 213.4 293 46.1
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 4.6e-53 212.6 265 48.7
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 2.3e-52 210.3 295 45.4
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 3.0e-52 209.9 273 45.4
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 5.1e-52 209.1 264 47.7
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.1e-52 209.1 291 45.4
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.1e-52 209.1 293 45.1
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 8.7e-52 208.4 263 48.3
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.5e-51 207.6 267 46.8
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.9e-51 207.2 290 45.2
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 2.5e-51 206.8 301 43.5
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.5e-51 206.8 273 46.2
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 4.3e-51 206.1 293 44.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.3e-50 204.5 276 44.9
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.6e-50 204.1 263 45.6
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 2.1e-50 203.8 294 44.6
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 3.6e-50 203.0 291 43.3
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 4.8e-50 202.6 268 45.9
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 6.2e-50 202.2 263 47.1
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 6.2e-50 202.2 241 49.0
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 8.1e-50 201.8 264 46.2
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 8.1e-50 201.8 264 46.2
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 1.1e-49 201.4 282 45.0
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-49 201.1 274 44.2
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 3.1e-49 199.9 278 45.3
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 3.1e-49 199.9 290 42.8
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 4.0e-49 199.5 304 44.1
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 9.0e-49 198.4 269 46.1
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 9.0e-49 198.4 272 44.1
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 9.0e-49 198.4 360 40.6
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.2e-48 198.0 287 44.6
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 4.5e-48 196.1 291 41.6
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 5.8e-48 195.7 281 41.3
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 5.8e-48 195.7 261 46.0
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 9.9e-48 194.9 261 46.0
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 9.9e-48 194.9 286 42.3
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 9.9e-48 194.9 285 41.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.3e-47 194.5 291 43.3
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 2.9e-47 193.4 283 44.5
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 2.4e-46 190.3 286 42.0
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.4e-46 190.3 286 42.7
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 3.2e-46 189.9 242 45.9
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 3.2e-46 189.9 279 44.1
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 4.2e-46 189.5 289 42.2
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 4.2e-46 189.5 286 42.3
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 3.5e-45 186.4 286 41.3
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 6.0e-45 185.7 283 43.5
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.8e-44 184.1 255 46.3
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.0e-44 183.3 274 43.1
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 5.1e-44 182.6 313 37.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 6.7e-44 182.2 260 43.8
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 2.5e-43 180.3 288 40.3
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 3.3e-43 179.9 304 42.1
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 6.2e-42 175.6 302 40.4
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 3.1e-41 173.3 294 40.1
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 2.0e-40 170.6 212 48.6
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.9e-38 164.1 297 39.1
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 4.2e-38 162.9 289 39.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.7e-37 160.2 262 40.8
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 7.9e-37 158.7 290 39.0
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.3e-36 157.9 303 38.0
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.8e-36 157.5 272 37.9
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 5.1e-36 156.0 283 38.9
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 5.1e-36 156.0 215 43.7
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 6.7e-36 155.6 280 37.5
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.1e-35 154.8 300 38.0
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.5e-35 154.5 283 38.9
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 5.6e-35 152.5 295 36.3
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 2.1e-34 150.6 217 46.1
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 3.7e-34 149.8 286 37.4
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.4e-33 147.1 267 39.7
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 3.2e-30 136.7 214 42.5
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.0e-23 115.2 161 44.7
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.6e-21 107.8 206 36.9
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 1.6e-21 107.8 177 38.4
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 2.3e-20 104.0 214 36.0
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 2.3e-20 104.0 102 52.0
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 5.1e-20 102.8 178 39.9
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.9e-19 100.9 162 38.9
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.8e-17 94.4 196 35.7
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 2.4e-17 94.0 226 35.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 8.5e-15 85.5 205 34.1
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 2.5e-14 84.0 188 34.6
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 6.1e-13 79.3 142 43.7
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 3.0e-12 77.0 65 56.9
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.8e-12 75.5 62 62.9
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 9.7e-11 72.0 91 44.0
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.7e-10 71.2 189 31.7
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.8e-10 69.7 143 35.0
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-09 67.8 100 42.0
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.5e-08 63.2 106 41.5
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.0e-07 62.0 151 32.5
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.7e-07 61.2 65 50.8
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 4.2e-06 56.6 93 39.8
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 4.2e-06 56.6 93 39.8


User provided reference genes

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