Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g113670 Amaranthus hybridus HOM05D005637 ORTHO05D006983 4.2e-124 448.0 218 100.0
Ah.02g113660 Amaranthus hybridus HOM05D005637 ORTHO05D006983 5.8e-57 224.9 164 74.4
EL10Ac5g11048 Beta vulgaris HOM05D005637 ORTHO05D006983 9.3e-55 217.6 164 71.3
AUR62008440 Chenopodium quinoa HOM05D005637 ORTHO05D006983 3.0e-53 212.6 167 69.5
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 3.7e-51 205.7 165 69.1
AUR62021650 Chenopodium quinoa HOM05D005637 ORTHO05D006983 2.4e-50 203.0 161 68.9
Manes.14G080801 Manihot esculenta HOM05D005637 ORTHO05D006983 2.5e-47 193.0 165 63.0
Actinidia04874 Actinidia chinensis HOM05D005637 ORTHO05D006983 4.2e-47 192.2 165 63.0
Haze_07302 Corylus avellana HOM05D005637 ORTHO05D006983 5.5e-47 191.8 166 62.7
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 7.1e-47 191.4 166 61.4
CAN.G648.12 Capsicum annuum HOM05D005637 ORTHO05D006983 1.0e-45 187.6 165 61.2
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 1.0e-45 187.6 166 60.8
vmacro17563 Vaccinium macrocarpon HOM05D005637 ORTHO05D006983 1.0e-45 187.6 165 61.8
PGR119G0762 Punica granatum HOM05D005637 ORTHO05D006983 1.8e-45 186.8 164 64.0
Cc00_g08390 Coffea canephora HOM05D005637 ORTHO05D006983 6.7e-45 184.9 165 61.8
CSS0030079 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 8.7e-45 184.5 166 60.8
Dinv10648 Davidia involucrata HOM05D005637 ORTHO05D006983 1.5e-44 183.7 166 61.4
TWI75G0754 Tripterygium wilfordii HOM05D005637 ORTHO05D006983 1.9e-44 183.3 166 59.6
Cpa.g.sc57.35 Carica papaya HOM05D005637 ORTHO05D006983 3.3e-44 182.6 163 60.7
Peaxi162Scf00106g00427 Petunia axillaris HOM05D005637 ORTHO05D006983 3.3e-44 182.6 165 61.2
CDE02G3019 Ceratophyllum demersum HOM05D005637 ORTHO05D006983 5.7e-44 181.8 171 57.3
QL10p017509 Quercus lobata HOM05D005637 ORTHO05D006983 9.6e-44 181.0 166 60.8
ATR0564G491 Amborella trichopoda HOM05D005637 ORTHO05D006983 4.8e-43 178.7 164 60.4
BcaB03g11995 Brassica carinata HOM05D005637 ORTHO05D006983 4.8e-43 178.7 166 59.6
TAR496G0002 Trochodendron aralioides HOM05D005637 ORTHO05D006983 6.3e-43 178.3 166 57.8
TAR629G0341 Trochodendron aralioides HOM05D005637 ORTHO05D006983 6.3e-43 178.3 166 57.8
MBI02_g20483_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 8.2e-43 177.9 128 68.8
HPP92_011002 Vanilla planifolia HOM05D005637 ORTHO05D006983 1.4e-42 177.2 166 57.8
Prupe.1G278400 Prunus persica HOM05D005637 ORTHO05D006983 5.3e-42 175.3 166 60.2
PGSC0003DMG400021937 Solanum tuberosum HOM05D005637 ORTHO05D006983 5.3e-42 175.3 165 58.8
A08p27370 Brassica napus HOM05D005637 ORTHO05D006983 1.5e-41 173.7 166 58.4
BraA08t34678Z Brassica rapa HOM05D005637 ORTHO05D006983 1.5e-41 173.7 166 58.4
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 1.5e-41 173.7 166 59.0
ECA247G3019 Erigeron canadensis HOM05D005637 ORTHO05D006983 1.5e-41 173.7 169 56.8
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 2.0e-41 173.3 164 59.8
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 2.6e-41 172.9 165 59.4
AL1G39180 Arabidopsis lyrata HOM05D005637 ORTHO05D006983 1.0e-40 171.0 166 57.8
Carub.0001s2449 Capsella rubella HOM05D005637 ORTHO05D006983 1.0e-40 171.0 166 57.8
CARHR025420 Cardamine hirsuta HOM05D005637 ORTHO05D006983 1.0e-40 171.0 166 57.8
CsaV3_5G025290 Cucumis sativus L. HOM05D005637 ORTHO05D006983 1.0e-40 171.0 169 58.0
C05p24490 Brassica napus HOM05D005637 ORTHO05D006983 2.2e-40 169.9 166 57.2
BolC5t31183H Brassica oleracea HOM05D005637 ORTHO05D006983 2.2e-40 169.9 166 57.2
Pp3c26_7640 Physcomitrium patens HOM05D005637 ORTHO05D006983 2.2e-40 169.9 164 58.5
Sp1g22230 Schrenkiella parvula HOM05D005637 ORTHO05D006983 2.2e-40 169.9 166 58.4
AT1G26550 Arabidopsis thaliana HOM05D005637 ORTHO05D006983 2.9e-40 169.5 166 57.2
CiPaw.11G046600 Carya illinoinensis HOM05D005637 ORTHO05D006983 2.9e-40 169.5 171 56.1
GSVIVG01007979001 Vitis vinifera HOM05D005637 ORTHO05D006983 2.9e-40 169.5 166 59.6
HanXRQChr04g0107301 Helianthus annuus HOM05D005637 ORTHO05D006983 5.0e-40 168.7 93 80.6
Os09g0411700 Oryza sativa ssp. japonica HOM05D005637 ORTHO05D006983 5.0e-40 168.7 171 55.6
Medtr3g037570 Medicago truncatula HOM05D005637 ORTHO05D006983 8.5e-40 167.9 166 58.4
Oeu052447.1 Olea europaea HOM05D005637 ORTHO05D006983 1.4e-39 167.2 85 88.2
Aqoxy3G03463 Aquilegia oxysepala HOM05D005637 ORTHO05D006983 1.9e-39 166.8 165 56.4
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 1.9e-39 166.8 170 57.6
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.9e-39 166.8 170 57.6
CANSAT80G1152 Cannabis sativa HOM05D005637 ORTHO05D006983 2.5e-39 166.4 166 57.8
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 2.5e-39 166.4 169 57.4
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 4.2e-39 165.6 170 57.1
LjContig00103g0026967 Lotus japonicus HOM05D005637 ORTHO05D006983 5.5e-39 165.2 86 84.9
Nitab4.5_0001195g0050 Nicotiana tabacum HOM05D005637 ORTHO05D006983 5.5e-39 165.2 85 88.2
Nitab4.5_0001997g0100 Nicotiana tabacum HOM05D005637 ORTHO05D006983 5.5e-39 165.2 85 88.2
THA.LOC104822041 Tarenaya hassleriana HOM05D005637 ORTHO05D006983 5.5e-39 165.2 85 85.9
COL.COLO4_36923 Corchorus olitorius HOM05D005637 ORTHO05D006983 9.3e-39 164.5 85 85.9
Duzib068G0698 Durio zibethinus HOM05D005637 ORTHO05D006983 9.3e-39 164.5 85 85.9
Duzib205G1800 Durio zibethinus HOM05D005637 ORTHO05D006983 9.3e-39 164.5 85 85.9
Gohir.D07G069000 Gossypium hirsutum HOM05D005637 ORTHO05D006983 9.3e-39 164.5 85 87.1
Gorai.001G072500 Gossypium raimondii HOM05D005637 ORTHO05D006983 9.3e-39 164.5 85 87.1
LjContig00102g0010410 Lotus japonicus HOM05D005637 ORTHO05D006983 1.2e-38 164.1 129 62.0
PSO832G2445 Papaver somniferum HOM05D005637 ORTHO05D006983 1.2e-38 164.1 169 53.8
AagrBONN_evm.TU.Sc2ySwM_228.632 Anthoceros agrestis HOM05D005637 ORTHO05D006983 2.1e-38 163.3 130 61.5
Glyma.06G195800 Glycine max HOM05D005637 ORTHO05D006983 2.1e-38 163.3 85 85.9
Lalb_Chr08g0235561 Lupinus albus HOM05D005637 ORTHO05D006983 2.1e-38 163.3 164 55.5
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 2.1e-38 163.3 85 84.7
A09p39930 Brassica napus HOM05D005637 ORTHO05D006983 2.7e-38 162.9 166 56.0
BraA09t39492Z Brassica rapa HOM05D005637 ORTHO05D006983 2.7e-38 162.9 166 56.0
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 2.7e-38 162.9 170 56.5
Thecc.03G093000 Theobroma cacao HOM05D005637 ORTHO05D006983 2.7e-38 162.9 85 84.7
Gohir.A07G064200 Gossypium hirsutum HOM05D005637 ORTHO05D006983 3.6e-38 162.5 163 56.4
Atru.chr9.197 Acer truncatum HOM05D005637 ORTHO05D006983 4.6e-38 162.2 93 78.5
TPR.G11903 Trifolium pratense HOM05D005637 ORTHO05D006983 4.6e-38 162.2 85 84.7
AagrBONN_evm.TU.Sc2ySwM_362.586 Anthoceros agrestis HOM05D005637 ORTHO05D006983 6.1e-38 161.8 85 83.5
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 6.1e-38 161.8 85 87.1
Glyma.04G166700 Glycine max HOM05D005637 ORTHO05D006983 6.1e-38 161.8 85 84.7
Phvul.009G185800 Phaseolus vulgaris HOM05D005637 ORTHO05D006983 7.9e-38 161.4 85 83.5
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 7.9e-38 161.4 85 84.7
Sopen12g016310 Solanum pennellii HOM05D005637 ORTHO05D006983 1.3e-37 160.6 165 55.2
VMungo1309G0753 Vigna mungo HOM05D005637 ORTHO05D006983 1.3e-37 160.6 85 83.5
Nn2g15887 Nelumbo nucifera HOM05D005637 ORTHO05D006983 3.0e-37 159.5 166 55.4
Zm00001eb312430 Zea mays HOM05D005637 ORTHO05D006983 3.0e-37 159.5 173 54.9
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 3.9e-37 159.1 165 54.5
MD00G1081600 Malus domestica HOM05D005637 ORTHO05D006983 5.1e-37 158.7 85 84.7
SMO367G1093 Selaginella moellendorffii HOM05D005637 ORTHO05D006983 5.1e-37 158.7 170 52.9
Thhalv10009046m.g Eutrema salsugineum HOM05D005637 ORTHO05D006983 8.7e-37 157.9 166 54.8
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 8.7e-37 157.9 165 53.3
Solyc12g036200.2 Solanum lycopersicum HOM05D005637 ORTHO05D006983 8.7e-37 157.9 165 55.2
Potri.008G089900 Populus trichocarpa HOM05D005637 ORTHO05D006983 1.5e-36 157.1 168 55.4
CANSAT80G0999 Cannabis sativa HOM05D005637 ORTHO05D006983 1.9e-36 156.8 160 56.9
Psat5g200400 Pisum sativum HOM05D005637 ORTHO05D006983 1.9e-36 156.8 166 54.8
ClCG09G021890 Citrullus lanatus HOM05D005637 ORTHO05D006983 2.5e-36 156.4 169 53.3
Ca_14657_v3 Cicer arietinum L. HOM05D005637 ORTHO05D006983 3.3e-36 156.0 169 53.3
Sabra08G0067300 Salix brachista HOM05D005637 ORTHO05D006983 7.4e-36 154.8 166 54.8
CSS0002747 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 2.2e-35 153.3 85 82.4
MELO3C002951.2 Cucumis melo HOM05D005637 ORTHO05D006983 2.8e-35 152.9 169 52.7
arahy.Tifrunner.gnm1.ann1.M53U4W Arachis hypogaea HOM05D005637 ORTHO05D006983 1.4e-34 150.6 165 52.7
CBR_g30502 Chara braunii HOM05D005637 ORTHO05D006983 1.8e-34 150.2 84 81.0
arahy.Tifrunner.gnm1.ann1.KT0WW2 Arachis hypogaea HOM05D005637 ORTHO05D006983 4.1e-34 149.1 165 52.1
MBI04_g11434_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 6.9e-34 148.3 151 53.6
Lsat_1_v5_gn_1_14240 Lactuca sativa HOM05D005637 ORTHO05D006983 3.8e-32 142.5 148 54.7
Sabra10G0125900 Salix brachista HOM05D005637 ORTHO05D006983 8.5e-32 141.4 178 51.1
SalBow5G0960 Salvia bowleyana HOM05D005637 ORTHO05D006983 9.7e-28 127.9 165 50.3
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 4.1e-26 122.5 120 62.5
CSS0006784 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 2.0e-25 120.2 166 45.2
CSS0019959 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 7.7e-25 118.2 67 76.1
TAR365G0307 Trochodendron aralioides HOM05D005637 ORTHO05D006983 4.7e-22 109.0 58 77.6
LjContig00261g0007071 Lotus japonicus HOM05D005637 ORTHO05D006983 4.4e-20 102.4 162 42.6
BcaC06g35140 Brassica carinata HOM05D005637 ORTHO05D006983 1.7e-19 100.5 165 43.6
CSS0007590 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 2.2e-19 100.1 54 81.5
Sed0018902 Sechium edule HOM05D005637 ORTHO05D006983 4.1e-18 95.9 60 71.7
BcaC01g01741 Brassica carinata HOM05D005637 ORTHO05D006983 5.3e-18 95.5 49 83.7
C03p72380 Brassica napus HOM05D005637 ORTHO05D006983 5.3e-18 95.5 49 83.7
BolC3t19533H Brassica oleracea HOM05D005637 ORTHO05D006983 5.3e-18 95.5 49 83.7
arahy.Tifrunner.gnm1.ann1.DXDM30 Arachis hypogaea HOM05D005637 ORTHO05D006983 9.1e-18 94.7 119 51.3
CSS0040245 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.7e-16 90.5 47 87.2
Aa31LG7G8540 Aethionema arabicum HOM05D005637 ORTHO05D006983 2.2e-16 90.1 122 48.4
BcaB04g17310 Brassica carinata HOM05D005637 ORTHO05D006983 8.0e-14 81.6 115 50.4
C07p19400 Brassica napus HOM05D005637 ORTHO05D006983 2.3e-13 80.1 50 72.0
BolC7t42459H Brassica oleracea HOM05D005637 ORTHO05D006983 2.3e-13 80.1 48 75.0
BcaB03g12359 Brassica carinata HOM05D005637 ORTHO05D006983 2.6e-12 76.6 115 47.0
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.1e-10 71.2 108 42.6
Manes.06G090201 Manihot esculenta HOM05D005637 ORTHO05D006983 2.4e-10 70.1 118 40.7
BcaC03g15376 Brassica carinata HOM05D005637 ORTHO05D006983 4.1e-10 69.3 166 35.5
CSS0009360 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 4.5e-09 65.9 101 46.5
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 1.1e-07 61.2 57 50.9
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 3.2e-07 59.7 89 36.0
Gorai.007G048100 Gossypium raimondii HOM05D000811 ORTHO05D004743 2.7e-06 56.6 95 37.9
Duzib147G0350 Durio zibethinus HOM05D000811 ORTHO05D004743 3.6e-06 56.2 95 34.7
Haze_26720 Corylus avellana HOM05D000811 ORTHO05D004743 4.7e-06 55.8 54 50.0
MD04G1047200 Malus domestica HOM05D000811 ORTHO05D004743 8.0e-06 55.1 100 37.0


User provided reference genes

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