Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g113480 Amaranthus hybridus HOM05D006971 ORTHO05D009076 1.9e-209 732.3 374 100.0
AUR62008412 Chenopodium quinoa HOM05D006971 ORTHO05D009076 5.7e-177 624.4 374 84.0
AUR62021684 Chenopodium quinoa HOM05D006971 ORTHO05D009076 2.0e-166 589.3 374 80.5
EL10Ac5g11009 Beta vulgaris HOM05D006971 ORTHO05D009076 7.0e-159 564.3 491 63.5
Dinv38707 Davidia involucrata HOM05D006971 ORTHO05D009076 4.5e-142 508.4 373 71.0
Actinidia04895 Actinidia chinensis HOM05D006971 ORTHO05D009076 4.2e-140 501.9 351 72.4
CiPaw.11G044200 Carya illinoinensis HOM05D006971 ORTHO05D009076 9.4e-140 500.7 372 69.4
Ciclev10020174m.g Citrus clementina HOM05D006971 ORTHO05D009076 2.7e-139 499.2 374 69.5
Nn4g23158 Nelumbo nucifera HOM05D006971 ORTHO05D009076 2.3e-138 496.1 370 67.6
Cpa.g.sc111.5 Carica papaya HOM05D006971 ORTHO05D009076 4.0e-138 495.4 372 68.8
CSS0007636 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 5.2e-138 495.0 372 69.1
CSS0034788 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 5.2e-138 495.0 372 69.1
TPR.G9261 Trifolium pratense HOM05D006971 ORTHO05D009076 8.8e-138 494.2 357 69.2
Lj4g0026607 Lotus japonicus HOM05D006971 ORTHO05D009076 2.0e-137 493.0 332 72.0
Medtr0493s0030 Medicago truncatula HOM05D006971 ORTHO05D009076 2.0e-137 493.0 357 68.9
Ca_21824_v3 Cicer arietinum L. HOM05D006971 ORTHO05D009076 7.5e-137 491.1 357 68.9
VMungo1215G2247 Vigna mungo HOM05D006971 ORTHO05D009076 7.5e-137 491.1 359 69.4
THA.LOC104808268 Tarenaya hassleriana HOM05D006971 ORTHO05D009076 9.8e-137 490.7 369 67.2
arahy.Tifrunner.gnm1.ann1.NVD91E Arachis hypogaea HOM05D006971 ORTHO05D009076 1.3e-136 490.3 368 67.9
Eucgr.B00501 Eucalyptus grandis HOM05D006971 ORTHO05D009076 2.2e-136 489.6 329 73.9
Nitab4.5_0004704g0010 Nicotiana tabacum HOM05D006971 ORTHO05D009076 2.2e-136 489.6 357 69.2
arahy.Tifrunner.gnm1.ann1.QE88UD Arachis hypogaea HOM05D006971 ORTHO05D009076 3.7e-136 488.8 366 67.2
Glyma.05G027100 Glycine max HOM05D006971 ORTHO05D009076 1.1e-135 487.3 359 68.8
Nitab4.5_0000842g0110 Nicotiana tabacum HOM05D006971 ORTHO05D009076 1.1e-135 487.3 357 68.6
Rhsim08G0155400 Rhododendron simsii HOM05D006971 ORTHO05D009076 1.1e-135 487.3 372 69.6
Lalb_Chr07g0178011 Lupinus albus HOM05D006971 ORTHO05D009076 1.4e-135 486.9 332 71.7
Manes.06G092900 Manihot esculenta HOM05D006971 ORTHO05D009076 4.1e-135 485.3 373 67.8
CANSAT80G1552 Cannabis sativa HOM05D006971 ORTHO05D009076 5.4e-135 485.0 374 67.6
QL10p016808 Quercus lobata HOM05D006971 ORTHO05D009076 5.4e-135 485.0 367 68.7
Glyma.17G099600 Glycine max HOM05D006971 ORTHO05D009076 9.1e-135 484.2 359 67.4
Phvul.003G190500 Phaseolus vulgaris HOM05D006971 ORTHO05D009076 1.2e-134 483.8 359 68.0
Psat4g051280 Pisum sativum HOM05D006971 ORTHO05D009076 1.2e-134 483.8 357 67.8
RcHm_v2.0_Chr7g0181351 Rosa chinensis HOM05D006971 ORTHO05D009076 2.0e-134 483.0 373 68.1
Hund02652 Selenicereus undatus HOM05D006971 ORTHO05D009076 2.0e-134 483.0 375 66.9
Prupe.5G193100 Prunus persica HOM05D006971 ORTHO05D009076 2.7e-134 482.6 346 69.4
TWI15G1038 Tripterygium wilfordii HOM05D006971 ORTHO05D009076 3.5e-134 482.3 345 70.4
Sopen03g035080 Solanum pennellii HOM05D006971 ORTHO05D009076 1.0e-133 480.7 358 68.7
Lj9A463T31 Lonicera japonica HOM05D006971 ORTHO05D009076 1.3e-133 480.3 305 77.0
PSO017G5818 Papaver somniferum HOM05D006971 ORTHO05D009076 3.8e-133 478.8 353 69.1
Solyc03g116110.3 Solanum lycopersicum HOM05D006971 ORTHO05D009076 3.8e-133 478.8 358 68.4
PGSC0003DMG400019536 Solanum tuberosum HOM05D006971 ORTHO05D009076 3.8e-133 478.8 358 68.7
CsaV3_1G005470 Cucumis sativus L. HOM05D006971 ORTHO05D009076 1.5e-132 476.9 373 67.0
HanXRQChr05g0158151 Helianthus annuus HOM05D006971 ORTHO05D009076 3.3e-132 475.7 346 70.2
CAN.G837.13 Capsicum annuum HOM05D006971 ORTHO05D009076 4.2e-132 475.3 358 67.3
Oeu006511.1 Olea europaea HOM05D006971 ORTHO05D009076 4.2e-132 475.3 357 69.7
MD14G1199800 Malus domestica HOM05D006971 ORTHO05D009076 5.5e-132 474.9 361 67.3
Aa31LG4G4870 Aethionema arabicum HOM05D006971 ORTHO05D009076 7.2e-132 474.6 328 69.8
ECA246G1831 Erigeron canadensis HOM05D006971 ORTHO05D009076 4.7e-131 471.9 340 69.4
PGR083G0834 Punica granatum HOM05D006971 ORTHO05D009076 1.0e-130 470.7 356 68.0
Sp5g29760 Schrenkiella parvula HOM05D006971 ORTHO05D009076 1.0e-130 470.7 375 65.6
BraA02t06985Z Brassica rapa HOM05D006971 ORTHO05D009076 1.4e-130 470.3 374 65.2
MELO3C001980.2 Cucumis melo HOM05D006971 ORTHO05D009076 1.4e-130 470.3 373 66.2
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 2.3e-130 469.5 373 66.2
AT1G74640 Arabidopsis thaliana HOM05D006971 ORTHO05D009076 2.3e-130 469.5 323 72.1
BcaC03g15516 Brassica carinata HOM05D006971 ORTHO05D009076 2.3e-130 469.5 364 65.9
C02p31990 Brassica napus HOM05D006971 ORTHO05D009076 5.2e-130 468.4 374 65.2
DCAR_016549 Daucus carota HOM05D006971 ORTHO05D009076 5.2e-130 468.4 349 68.8
GSVIVG01008006001 Vitis vinifera HOM05D006971 ORTHO05D009076 6.8e-130 468.0 358 66.2
A02p19460 Brassica napus HOM05D006971 ORTHO05D009076 2.0e-129 466.5 374 65.0
Carub.0002s2143 Capsella rubella HOM05D006971 ORTHO05D009076 2.6e-129 466.1 373 65.1
Sed0024719 Sechium edule HOM05D006971 ORTHO05D009076 2.6e-129 466.1 373 64.9
BcaB05g24862 Brassica carinata HOM05D006971 ORTHO05D009076 3.4e-129 465.7 341 69.5
CARHR067910 Cardamine hirsuta HOM05D006971 ORTHO05D009076 3.4e-129 465.7 306 74.5
Aqoxy3G04167 Aquilegia oxysepala HOM05D006971 ORTHO05D009076 5.7e-129 464.9 340 68.2
FAN18G2929 Fragaria x ananassa HOM05D006971 ORTHO05D009076 9.8e-129 464.2 307 76.2
FvH4_5g14981 Fragaria vesca HOM05D006971 ORTHO05D009076 1.7e-128 463.4 314 74.5
MBI02_g41659_MAGBIO Magnolia biondii HOM05D006971 ORTHO05D009076 2.8e-128 462.6 378 63.8
FAN04G0596 Fragaria x ananassa HOM05D006971 ORTHO05D009076 6.3e-128 461.5 419 60.9
Cc04_g16660 Coffea canephora HOM05D006971 ORTHO05D009076 1.4e-127 460.3 376 65.4
MSTRG.4425 Avicennia marina HOM05D006971 ORTHO05D009076 3.1e-127 459.1 379 65.2
SalBow7G4263 Salvia bowleyana HOM05D006971 ORTHO05D009076 4.1e-127 458.8 379 65.2
Zm00001eb099580 Zea mays HOM05D006971 ORTHO05D009076 9.2e-127 457.6 335 67.8
COL.COLO4_28316 Corchorus olitorius HOM05D006971 ORTHO05D009076 1.6e-126 456.8 355 66.2
Potri.017G115100 Populus trichocarpa HOM05D006971 ORTHO05D009076 2.7e-126 456.1 362 64.6
Thecc.03G086400 Theobroma cacao HOM05D006971 ORTHO05D009076 5.9e-126 454.9 362 65.2
FAN13G3185 Fragaria x ananassa HOM05D006971 ORTHO05D009076 1.2e-123 447.2 313 72.2
Lsat_1_v5_gn_5_20140 Lactuca sativa HOM05D006971 ORTHO05D009076 1.2e-123 447.2 345 67.0
TAR629G1638 Trochodendron aralioides HOM05D006971 ORTHO05D009076 1.6e-123 446.8 280 78.2
Sabra17G0095300 Salix brachista HOM05D006971 ORTHO05D009076 2.1e-123 446.4 361 62.9
Duzib205G0087 Durio zibethinus HOM05D006971 ORTHO05D009076 8.0e-123 444.5 351 65.8
Gohir.A08G094100 Gossypium hirsutum HOM05D006971 ORTHO05D009076 1.8e-122 443.4 376 62.5
Migut.D01821 Erythranthe guttata HOM05D006971 ORTHO05D009076 3.0e-122 442.6 381 63.0
ATR0564G273 Amborella trichopoda HOM05D006971 ORTHO05D009076 5.2e-122 441.8 376 60.9
SGA_v2.0_scaffold114G31906 Striga asiatica HOM05D006971 ORTHO05D009076 5.2e-122 441.8 374 63.1
Peaxi162Scf00274g00071 Petunia axillaris HOM05D006971 ORTHO05D009076 3.4e-121 439.1 296 74.7
Gorai.004G112200 Gossypium raimondii HOM05D006971 ORTHO05D009076 2.2e-120 436.4 393 60.1
PSO478G0283 Papaver somniferum HOM05D006971 ORTHO05D009076 1.4e-119 433.7 277 76.9
CDE07G1445 Ceratophyllum demersum HOM05D006971 ORTHO05D009076 5.4e-119 431.8 328 62.5
FAN08G1158 Fragaria x ananassa HOM05D006971 ORTHO05D009076 7.8e-118 427.9 278 77.7
unitig_60.g25418 Utricularia gibba HOM05D006971 ORTHO05D009076 7.8e-118 427.9 309 68.6
HPP92_002355 Vanilla planifolia HOM05D006971 ORTHO05D009076 4.7e-99 365.5 273 66.7
Mapoly0071s0120 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.8e-98 363.6 353 54.1
Mapoly0229s0006 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.8e-98 363.6 353 54.1
Cfa018946 Carpinus fangiana HOM05D006971 ORTHO05D009076 2.4e-98 363.2 249 72.3
Pp3c23_920 Physcomitrium patens HOM05D006971 ORTHO05D009076 4.6e-94 349.0 334 52.7
Gohir.D08G105301 Gossypium hirsutum HOM05D006971 ORTHO05D009076 1.5e-89 334.0 229 73.8
vmacro17544 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 7.6e-89 331.6 202 83.2
SMO111G0229 Selaginella moellendorffii HOM05D006971 ORTHO05D009076 1.9e-87 327.0 279 57.0
Os09g0413700 Oryza sativa ssp. japonica HOM05D006971 ORTHO05D009076 1.7e-85 320.5 268 61.9
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 1.1e-82 311.2 248 63.3
HPP92_027581 Vanilla planifolia HOM05D006971 ORTHO05D009076 1.4e-55 221.1 183 59.0
AagrBONN_evm.TU.Sc2ySwM_368.527 Anthoceros agrestis HOM05D006971 ORTHO05D009076 1.4e-39 167.9 185 45.4
vmacro17545 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 2.1e-38 164.1 149 56.4
Dinv19957 Davidia involucrata HOM05D006971 ORTHO05D009076 1.3e-35 154.8 125 68.0
ClCG04G012280 Citrullus lanatus HOM05D006971 ORTHO05D009076 4.1e-34 149.8 170 48.2
Thhalv10019619m.g Eutrema salsugineum HOM05D006971 ORTHO05D009076 2.6e-28 130.6 115 60.0
BcaB03g13848 Brassica carinata HOM05D006971 ORTHO05D009076 5.3e-26 122.9 117 54.7
Actinidia37630 Actinidia chinensis HOM05D000001 ORTHO05D008780 1.6e-25 121.3 85 74.1
SEGI_28088 Sequoiadendron giganteum HOM05D006971 ORTHO05D009076 9.4e-23 112.1 113 46.0
HPP92_027582 Vanilla planifolia HOM05D006971 ORTHO05D009076 7.5e-20 102.4 135 45.2
MD06G1192800 Malus domestica HOM05D006971 ORTHO05D009076 1.0e-16 92.0 84 59.5
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.2e-06 58.5 49 59.2
A07p29310 Brassica napus HOM05D006971 ORTHO05D041645 1.6e-06 58.2 48 64.6
BraA07t30570Z Brassica rapa HOM05D006971 ORTHO05D041645 1.6e-06 58.2 48 64.6


User provided reference genes

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