Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 9.0e-80 300.4 179 100.0
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 3.3e-50 202.2 148 87.2
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.8e-49 199.1 148 85.1
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.1e-48 197.2 148 84.5
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.8e-48 196.4 150 83.3
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 3.1e-48 195.7 148 84.5
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 2.0e-47 193.0 169 76.9
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 4.5e-47 191.8 150 81.3
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.7e-46 189.9 148 81.8
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 2.2e-46 189.5 148 82.4
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 2.2e-46 189.5 148 81.8
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 2.2e-46 189.5 148 79.7
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 2.9e-46 189.1 148 82.4
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 8.5e-46 187.6 148 81.8
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 8.5e-46 187.6 172 73.8
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 1.1e-45 187.2 148 82.4
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.9e-45 186.4 148 81.8
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.9e-45 186.4 150 78.7
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.9e-45 186.4 169 74.0
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 1.9e-45 186.4 169 74.0
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 2.5e-45 186.0 148 80.4
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 2.5e-45 186.0 148 80.4
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 2.5e-45 186.0 148 81.1
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 2.5e-45 186.0 148 81.1
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 2.5e-45 186.0 148 81.1
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 3.2e-45 185.7 148 80.4
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 3.2e-45 185.7 148 79.1
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 4.2e-45 185.3 169 73.4
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 5.5e-45 184.9 148 78.4
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 5.5e-45 184.9 148 81.8
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 5.5e-45 184.9 148 79.7
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 7.2e-45 184.5 168 73.2
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.6e-44 183.3 148 78.4
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 2.7e-44 182.6 148 79.7
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 2.7e-44 182.6 148 80.4
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 2.7e-44 182.6 148 80.4
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 2.7e-44 182.6 148 80.4
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 2.7e-44 182.6 148 79.1
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 2.7e-44 182.6 181 68.5
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 3.6e-44 182.2 148 80.4
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 3.6e-44 182.2 174 71.8
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.6e-44 181.8 148 78.4
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 6.1e-44 181.4 148 80.4
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 1.4e-43 180.3 148 77.7
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.8e-43 179.9 146 78.8
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 1.8e-43 179.9 148 79.7
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.8e-43 179.9 148 79.7
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.8e-43 179.9 148 78.4
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.8e-43 179.9 148 79.1
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 2.3e-43 179.5 163 72.4
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 3.0e-43 179.1 148 79.7
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 3.0e-43 179.1 148 79.7
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 3.0e-43 179.1 148 79.7
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 3.0e-43 179.1 148 78.4
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 3.0e-43 179.1 148 78.4
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 3.0e-43 179.1 148 79.1
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 3.0e-43 179.1 148 80.4
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 3.9e-43 178.7 141 81.6
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 5.1e-43 178.3 148 78.4
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.7e-43 177.9 148 79.1
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 6.7e-43 177.9 148 75.0
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 1.1e-42 177.2 148 78.4
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 1.1e-42 177.2 148 78.4
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.5e-42 176.8 148 77.0
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 2.0e-42 176.4 148 77.7
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 2.5e-42 176.0 143 79.0
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 3.3e-42 175.6 148 77.7
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 3.3e-42 175.6 148 77.0
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 3.3e-42 175.6 148 77.0
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 3.3e-42 175.6 148 77.7
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 3.3e-42 175.6 148 77.0
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 4.3e-42 175.3 144 77.8
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 7.4e-42 174.5 148 77.0
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 9.7e-42 174.1 148 77.0
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 1.3e-41 173.7 148 77.0
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 2.8e-41 172.6 164 72.0
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.8e-41 172.6 148 77.0
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.4e-40 170.2 148 77.0
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 1.8e-40 169.9 168 69.6
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 2.4e-40 169.5 148 74.3
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 2.4e-40 169.5 148 72.3
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 2.4e-40 169.5 173 68.2
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 2.4e-40 169.5 148 73.6
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 2.4e-40 169.5 148 74.3
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 3.1e-40 169.1 148 74.3
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 5.3e-40 168.3 148 71.6
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 5.3e-40 168.3 148 71.6
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 2.6e-39 166.0 148 72.3
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 3.4e-39 165.6 165 67.3
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 3.4e-39 165.6 148 72.3
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 1.3e-38 163.7 148 71.6
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 3.8e-38 162.2 148 75.0
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 3.8e-38 162.2 148 71.6
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 6.5e-38 161.4 148 71.6
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 2.5e-37 159.5 148 70.9
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 6.1e-36 154.8 148 68.2
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 6.1e-36 154.8 148 70.9
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 7.9e-36 154.5 168 62.5
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 1.0e-35 154.1 148 70.3
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 1.4e-35 153.7 126 80.2
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 1.8e-35 153.3 148 68.9
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 5.1e-35 151.8 148 70.3
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 1.1e-34 150.6 148 70.3
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 6.3e-33 144.8 148 68.2
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 3.5e-31 139.0 148 62.8
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 5.0e-30 135.2 163 62.0
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.3e-27 126.3 145 61.4
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.1e-26 124.0 148 62.2
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 5.0e-22 108.6 148 55.4
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 6.5e-22 108.2 145 55.9
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 8.5e-22 107.8 145 56.6
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.9e-21 106.7 78 66.7
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 2.1e-20 103.2 124 53.2
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 5.2e-19 98.6 145 54.5
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.2e-18 97.4 140 55.7
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 1.5e-18 97.1 110 60.0
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.7e-15 86.3 96 66.7
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 5.0e-14 82.0 45 80.0
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 2.7e-12 76.3 147 44.9
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 2.2e-09 66.6 99 51.5


User provided reference genes

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