Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 9.3e-190 666.8 350 100.0
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 6.4e-98 361.7 349 63.0
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 3.3e-94 349.4 358 60.6
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 5.3e-92 342.0 358 57.5
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 6.9e-84 315.1 342 58.5
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 6.0e-72 275.4 365 53.4
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 8.7e-71 271.6 361 47.9
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.5e-70 270.8 365 48.2
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.5e-70 270.8 365 52.9
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 5.6e-70 268.9 366 48.4
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 1.6e-69 267.3 357 48.5
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.6e-69 267.3 357 49.3
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.7e-69 266.2 360 48.1
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 6.2e-69 265.4 374 46.5
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.4e-68 264.2 359 47.6
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 2.4e-68 263.5 359 47.9
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 3.1e-68 263.1 352 48.9
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.1e-68 263.1 359 47.9
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.5e-67 260.8 384 49.0
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.5e-67 260.8 363 48.8
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 2.6e-67 260.0 370 46.2
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 3.4e-67 259.6 364 46.4
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 7.6e-67 258.5 351 49.9
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 7.6e-67 258.5 377 46.4
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 9.3e-65 251.5 357 49.0
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.2e-64 251.1 374 48.4
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.1e-64 250.4 365 49.9
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 6.0e-64 248.8 373 47.2
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 6.0e-64 248.8 365 46.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.9e-64 248.4 358 46.9
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 3.0e-63 246.5 346 47.4
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.1e-62 244.6 350 48.6
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 2.5e-62 243.4 369 45.5
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 3.3e-62 243.0 375 46.9
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 5.7e-62 242.3 369 47.2
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 1.6e-61 240.7 367 45.8
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 2.2e-61 240.4 366 45.1
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 8.2e-61 238.4 382 46.6
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 2.4e-60 236.9 354 45.5
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 3.1e-60 236.5 378 46.6
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 9.0e-60 235.0 345 47.8
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 1.2e-59 234.6 355 49.0
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.6e-59 233.4 349 49.9
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 2.6e-59 233.4 363 48.5
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 4.5e-59 232.6 375 45.9
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 5.9e-59 232.3 342 49.1
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 5.9e-59 232.3 350 47.1
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 7.7e-59 231.9 363 47.9
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.7e-58 230.7 362 46.4
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 8.5e-58 228.4 369 46.9
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.6e-56 224.2 346 46.5
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 3.0e-55 219.9 429 41.7
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 8.8e-55 218.4 352 48.6
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.3e-53 212.2 408 40.4
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 7.7e-51 205.3 365 42.2
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 1.3e-50 204.5 342 45.6
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 2.9e-50 203.4 360 41.7
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 2.9e-50 203.4 355 43.9
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 5.0e-50 202.6 340 44.4
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.2e-48 198.0 456 35.5
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 1.2e-48 198.0 339 43.4
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 1.6e-48 197.6 341 43.4
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.0e-47 194.9 395 39.7
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 1.4e-47 194.5 348 42.5
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 3.9e-47 193.0 401 40.6
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.1e-46 191.4 389 40.1
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 2.8e-45 186.8 364 41.8
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.8e-44 184.1 367 40.1
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 1.5e-43 181.0 380 40.5
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 2.0e-43 180.6 367 40.6
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 5.9e-43 179.1 425 38.6
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.0e-42 178.3 364 41.8
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.7e-42 177.6 361 42.1
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 1.7e-42 177.6 361 42.1
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 8.5e-42 175.3 405 39.5
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 5.5e-41 172.6 402 39.3
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 9.4e-41 171.8 297 44.1
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 2.7e-40 170.2 355 41.7
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 2.7e-40 170.2 355 41.7
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.0e-39 168.3 355 39.4
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 5.2e-39 166.0 370 40.5
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 1.5e-38 164.5 352 40.3
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 4.4e-38 162.9 288 41.3
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 2.2e-37 160.6 289 42.6
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.0e-35 154.1 352 36.6
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 1.0e-34 151.8 324 38.6
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 2.9e-34 150.2 314 39.2
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 6.5e-34 149.1 363 37.7
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 3.2e-33 146.7 283 41.7
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 2.8e-29 133.7 357 37.3
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 6.3e-29 132.5 288 38.2
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 1.8e-28 131.0 152 55.3
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 5.3e-28 129.4 315 36.8
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 1.1e-25 121.7 281 35.6
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.9e-25 120.9 359 34.3
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 3.2e-25 120.2 371 34.8
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 4.2e-25 119.8 392 32.9
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 9.4e-25 118.6 359 34.3
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 2.7e-24 117.1 296 36.1
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 3.0e-23 113.6 347 32.6
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 8.8e-23 112.1 365 31.5
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 8.3e-21 105.5 340 32.4
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 1.6e-16 91.3 66 72.7
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 4.0e-15 86.7 139 42.4
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.3e-13 81.6 311 30.9
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 8.6e-10 68.9 372 27.4
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 8.9e-07 58.9 217 30.9
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 2.0e-06 57.8 47 63.8
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 4.4e-06 56.6 51 54.9
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 4.4e-06 56.6 272 28.7
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 4.4e-06 56.6 69 46.4
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 7.5e-06 55.8 84 39.3
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.8e-06 55.5 70 48.6


User provided reference genes

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