Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 2.7e-225 785.0 400 100.0
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.0e-152 542.3 403 69.0
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 2.0e-151 539.7 404 68.8
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 3.3e-151 538.9 397 70.5
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 7.5e-119 431.4 402 58.0
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 1.9e-106 390.2 400 51.5
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 1.6e-105 387.1 400 51.5
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.4e-104 384.0 397 51.4
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.8e-104 383.6 400 50.8
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.1e-104 382.9 397 50.9
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 5.2e-104 382.1 397 50.6
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 8.9e-104 381.3 397 50.9
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 8.9e-104 381.3 397 50.9
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.0e-103 380.2 397 50.6
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 2.0e-103 380.2 401 50.1
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 2.2e-102 376.7 400 50.8
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 6.4e-102 375.2 400 52.0
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.9e-101 373.6 400 51.5
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 1.0e-99 367.9 397 48.6
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 5.1e-99 365.5 395 50.1
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 6.6e-99 365.2 401 48.1
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.1e-98 364.4 397 48.1
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.9e-98 363.6 402 47.5
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 3.3e-98 362.8 401 47.6
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 1.2e-97 360.9 397 47.9
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.1e-96 357.8 395 50.1
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 1.4e-96 357.5 400 47.2
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 5.2e-96 355.5 395 48.6
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 5.2e-96 355.5 399 46.9
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 6.8e-96 355.1 397 47.6
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 2.0e-95 353.6 402 47.3
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.0e-95 353.6 400 48.5
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 2.6e-95 353.2 397 50.1
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 3.4e-95 352.8 382 49.0
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 7.6e-95 351.7 397 47.1
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 2.2e-94 350.1 397 48.4
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 2.9e-94 349.7 379 48.0
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 4.9e-94 349.0 400 46.5
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 8.4e-94 348.2 395 50.6
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.4e-93 347.4 392 48.0
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 5.4e-93 345.5 397 49.4
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 5.4e-93 345.5 397 47.4
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 7.1e-93 345.1 395 47.8
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 9.3e-93 344.7 399 47.6
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.6e-92 344.0 397 49.4
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 1.6e-92 344.0 398 47.0
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 2.7e-92 343.2 396 46.2
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 7.8e-92 341.7 400 46.8
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 1.0e-91 341.3 357 50.4
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.3e-91 340.9 400 45.5
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.3e-91 340.9 399 45.4
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.3e-91 340.9 405 46.4
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.3e-91 340.9 399 43.4
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 2.3e-91 340.1 397 47.6
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 3.9e-91 339.3 396 45.5
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 6.6e-91 338.6 398 47.5
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 6.6e-91 338.6 403 46.9
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 8.7e-91 338.2 400 45.2
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 1.1e-90 337.8 400 43.5
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 1.5e-90 337.4 400 45.0
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.5e-90 336.7 397 45.3
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 2.5e-90 336.7 400 46.5
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 3.3e-90 336.3 397 45.8
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 1.3e-89 334.3 396 45.2
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 1.6e-89 334.0 396 44.2
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 2.8e-89 333.2 395 45.6
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 3.6e-89 332.8 395 44.8
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 6.2e-89 332.0 395 46.8
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 1.4e-88 330.9 414 45.9
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 1.8e-88 330.5 396 46.5
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 4.0e-88 329.3 400 43.8
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 9.0e-88 328.2 395 45.6
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 2.6e-87 326.6 395 45.8
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 3.4e-87 326.2 397 45.3
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 5.8e-87 325.5 397 45.6
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 2.9e-86 323.2 403 43.9
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 2.9e-86 323.2 401 43.9
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 4.9e-86 322.4 400 46.0
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 1.4e-85 320.9 423 42.8
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 1.4e-85 320.9 423 42.6
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 1.4e-85 320.9 423 42.6
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 3.2e-85 319.7 400 42.8
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 7.1e-85 318.5 401 44.6
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 1.2e-84 317.8 394 44.4
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 2.1e-84 317.0 424 43.4
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 7.9e-84 315.1 394 46.4
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 1.7e-83 313.9 402 43.5
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 3.9e-83 312.8 397 43.3
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 3.9e-83 312.8 396 43.4
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 8.7e-83 311.6 395 42.5
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 1.1e-82 311.2 423 41.8
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 2.5e-82 310.1 400 43.5
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 3.4e-79 299.7 400 43.2
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 4.5e-79 299.3 400 43.5
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 9.9e-79 298.1 400 43.5
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 2.4e-77 293.5 413 39.5
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 4.2e-77 292.7 394 43.9
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 5.5e-77 292.4 392 41.6
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 6.0e-76 288.9 403 41.7
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.3e-75 287.7 390 42.6
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 2.3e-75 287.0 401 41.9
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.0e-75 286.6 401 42.1
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 5.1e-75 285.8 268 54.9
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.5e-74 283.5 401 42.1
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.1e-72 278.1 400 42.0
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 6.9e-72 275.4 314 48.4
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 9.0e-72 275.0 271 49.8
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 7.1e-69 265.4 343 46.9
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 1.2e-68 264.6 396 40.2
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.8e-64 250.8 290 45.9
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 4.5e-63 246.1 315 46.3
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 3.7e-57 226.5 178 60.7
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 1.3e-49 201.4 428 34.1
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.8e-40 171.0 223 40.4
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 1.5e-37 161.4 401 29.9
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 7.5e-34 149.1 226 34.5
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 2.9e-30 137.1 204 35.3
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 2.8e-25 120.6 203 37.4
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.3e-22 111.7 259 31.7
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 1.1e-21 108.6 355 26.8
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 9.5e-21 105.5 368 25.3
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 9.5e-21 105.5 368 25.3
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 4.4e-18 96.7 179 39.1
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 8.3e-17 92.4 254 29.9
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 7.0e-16 89.4 308 24.0
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.9e-14 84.0 186 32.8
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 8.6e-14 82.4 356 26.7
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 5.7e-10 69.7 121 37.2
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 2.0e-07 61.2 265 24.5


User provided reference genes

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