Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 7.6e-61 236.9 112 100.0
Ah.05g173300 Amaranthus hybridus HOM05D015883 ORTHO05D005553 3.1e-14 82.0 37 100.0
Ah.08g218670 Amaranthus hybridus HOM05D015883 ORTHO05D005553 3.5e-13 78.6 70 60.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 8.5e-12 73.9 36 94.4
Ah.03g146440 Amaranthus hybridus HOM05D015883 ORTHO05D005553 1.6e-10 69.7 38 81.6
Ah.04g160270 Amaranthus hybridus HOM05D015883 ORTHO05D005553 8.0e-10 67.4 38 84.2
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 3.0e-09 65.5 74 51.4
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 4.0e-09 65.1 52 63.5
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 4.0e-09 65.1 50 64.0
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 6.8e-09 64.3 42 73.8
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 6.8e-09 64.3 42 73.8
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 6.8e-09 64.3 42 73.8
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.8e-09 63.9 42 71.4
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 8.8e-09 63.9 46 65.2
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 8.8e-09 63.9 56 53.6
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.2e-08 63.5 43 69.8
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.0e-08 62.8 43 69.8
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.0e-08 62.8 43 74.4
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 7.5e-08 60.8 50 58.0
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 9.8e-08 60.5 52 59.6
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 9.8e-08 60.5 53 60.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 9.8e-08 60.5 43 69.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.3e-07 60.1 76 46.1
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.7e-07 59.7 42 71.4
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.7e-07 59.7 42 71.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.2e-07 59.3 42 71.4
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.2e-07 59.3 42 71.4
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.2e-07 59.3 42 71.4
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.8e-07 58.9 78 51.3
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.8e-07 58.9 40 75.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 8.3e-07 57.4 43 67.4
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 8.3e-07 57.4 40 67.5
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 8.3e-07 57.4 39 69.2
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.1e-06 57.0 41 68.3
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.4e-06 56.6 42 64.3
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.4e-06 56.6 53 56.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.4e-06 56.6 58 51.7
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.4e-06 56.6 45 57.8
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.8e-06 56.2 40 70.0
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.4e-06 55.8 40 67.5
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.4e-06 55.8 42 64.3
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.1e-06 55.5 42 66.7
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.1e-06 55.1 44 65.9
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.4e-06 54.7 47 55.3
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 9.1e-06 53.9 38 68.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.1e-06 53.9 40 62.5
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.1e-06 53.9 40 62.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.1e-06 53.9 40 62.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 9.1e-06 53.9 37 73.0
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 9.1e-06 53.9 44 63.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 9.1e-06 53.9 43 62.8


User provided reference genes

Program Settings