Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 2.4e-139 498.8 247 100.0
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.4e-99 366.7 259 75.7
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 7.2e-88 327.8 260 69.6
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.7e-81 306.6 219 73.5
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.2e-76 289.7 212 71.7
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.4e-70 270.4 260 58.8
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 6.8e-70 268.1 263 57.4
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.5e-69 266.9 255 57.3
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.9e-68 262.7 248 56.9
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.1e-67 258.8 224 63.4
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.6e-66 255.4 257 56.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.0e-66 255.0 257 55.6
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 7.8e-66 254.6 250 57.6
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 7.8e-66 254.6 250 57.6
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 6.6e-65 251.5 235 60.9
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 2.5e-64 249.6 236 59.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 4.3e-64 248.8 266 54.9
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.6e-63 246.9 255 54.9
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.1e-63 246.5 252 57.1
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 8.1e-63 244.6 247 56.7
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 1.1e-62 244.2 226 59.7
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.8e-62 243.4 264 54.5
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.8e-62 243.4 247 53.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 4.0e-62 242.3 239 59.0
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 4.0e-62 242.3 237 57.8
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.5e-61 240.4 258 53.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.5e-61 240.4 251 54.6
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.4e-61 239.2 258 54.7
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 9.8e-61 237.7 279 52.3
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 2.2e-60 236.5 242 56.6
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 3.7e-60 235.7 247 54.3
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.7e-60 235.7 241 56.4
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 4.9e-60 235.3 225 58.7
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 8.3e-60 234.6 251 53.0
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 1.4e-59 233.8 265 52.8
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.9e-59 233.4 273 54.6
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.4e-59 233.0 251 52.6
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 3.2e-59 232.6 261 52.1
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 7.1e-59 231.5 235 55.7
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 9.2e-59 231.1 251 53.4
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 9.2e-59 231.1 263 53.6
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.1e-58 229.9 282 52.5
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 2.7e-58 229.6 248 56.0
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 3.5e-58 229.2 276 52.5
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.5e-58 229.2 238 53.4
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.5e-58 229.2 238 53.4
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 4.6e-58 228.8 218 56.9
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 6.0e-58 228.4 251 52.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 7.8e-58 228.0 261 50.6
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.0e-57 227.6 266 52.6
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.0e-57 227.6 249 54.2
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.0e-57 227.6 248 55.6
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.0e-57 227.6 230 59.1
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 2.3e-57 226.5 231 58.0
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.3e-57 226.5 247 53.0
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 3.0e-57 226.1 244 53.3
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 8.6e-57 224.6 244 53.3
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 8.6e-57 224.6 260 51.5
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.5e-56 223.8 198 63.6
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.9e-56 223.4 194 63.9
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.9e-56 223.4 246 54.1
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 3.3e-56 222.6 216 55.1
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 4.3e-56 222.2 239 54.0
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 9.5e-56 221.1 262 51.9
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 9.5e-56 221.1 229 56.8
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.6e-55 220.3 198 63.1
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.6e-55 220.3 258 51.6
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 4.7e-55 218.8 260 51.5
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.4e-54 217.2 260 51.2
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 4.0e-54 215.7 215 56.3
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.2e-53 214.2 228 55.3
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 2.6e-53 213.0 219 55.7
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 5.8e-53 211.8 221 54.3
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.7e-52 210.3 310 45.5
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 6.4e-52 208.4 175 62.9
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 8.4e-52 208.0 208 59.1
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.9e-51 206.8 245 52.2
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 2.4e-51 206.5 234 53.0
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.6e-50 203.8 227 53.7
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.7e-50 203.0 217 54.4
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 2.5e-48 196.4 211 53.1
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 4.3e-48 195.7 242 50.4
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 6.2e-47 191.8 237 51.1
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 6.2e-47 191.8 237 51.5
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 8.1e-47 191.4 241 51.0
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.8e-46 190.3 226 54.0
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.2e-45 187.6 230 51.3
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 2.0e-45 186.8 270 45.6
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.4e-45 186.0 223 50.2
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 5.8e-45 185.3 220 50.9
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 7.6e-45 184.9 236 52.1
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 9.9e-45 184.5 236 52.1
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 2.9e-44 183.0 263 49.8
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.9e-44 183.0 217 50.2
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 4.9e-44 182.2 212 53.8
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 8.4e-44 181.4 217 53.0
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 8.4e-44 181.4 217 53.0
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 8.4e-44 181.4 217 53.0
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 1.1e-43 181.0 170 58.2
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.1e-40 171.0 196 52.0
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 9.6e-40 167.9 182 52.7
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 4.8e-39 165.6 186 52.7
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 8.1e-39 164.9 286 42.0
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.4e-38 164.1 232 46.6
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.4e-38 163.3 232 47.8
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 3.1e-38 162.9 232 44.4
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 9.0e-38 161.4 195 51.3
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 2.6e-37 159.8 419 32.7
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 7.6e-37 158.3 176 50.0
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.9e-36 156.4 185 49.7
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 3.8e-36 156.0 239 44.4
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.2e-34 151.0 181 49.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.3e-31 141.0 150 56.0
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.1e-30 137.9 233 42.9
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 3.1e-30 136.3 262 40.1
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 1.2e-29 134.4 182 46.2
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.6e-26 124.0 125 60.8
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.5e-24 116.7 166 45.8
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 1.8e-22 110.5 173 41.0
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.5e-21 107.5 207 42.0
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 7.1e-19 98.6 211 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 2.1e-18 97.1 197 38.6
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 3.0e-17 93.2 123 48.0
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.1e-14 84.7 61 67.2
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 4.1e-14 82.8 50 72.0
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 7.6e-13 78.6 146 42.5
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 5.5e-11 72.4 70 54.3
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 3.0e-09 66.6 121 39.7
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 8.7e-09 65.1 57 57.9


User provided reference genes

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