Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.1e-111 406.8 218 100.0
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.5e-81 306.6 251 72.9
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 5.8e-81 304.7 262 67.9
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 6.4e-80 301.2 156 100.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.0e-77 292.4 171 93.0
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 7.3e-76 287.7 171 92.4
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.1e-74 283.9 156 93.6
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.1e-74 283.9 156 93.6
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 2.6e-73 279.3 156 92.3
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 4.4e-73 278.5 160 91.2
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 8.4e-72 274.2 147 95.9
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.4e-71 273.5 152 93.4
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 1.9e-71 273.1 144 97.2
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 2.4e-71 272.7 156 91.0
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 5.4e-71 271.6 156 91.7
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.1e-71 271.2 154 90.3
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 9.3e-71 270.8 204 76.0
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.2e-70 270.4 147 94.6
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.2e-70 270.4 147 94.6
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.2e-70 270.4 147 94.6
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.1e-70 269.6 154 89.6
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 3.5e-70 268.9 186 81.2
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 3.5e-70 268.9 186 81.2
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 4.6e-70 268.5 156 92.3
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.0e-70 268.1 215 70.2
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 1.7e-69 266.5 146 94.5
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 1.5e-68 263.5 146 94.5
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.3e-68 262.3 211 72.5
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.3e-68 262.3 211 72.5
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 5.6e-68 261.5 146 93.8
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 5.6e-68 261.5 146 93.8
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 4.8e-67 258.5 146 93.2
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 6.9e-66 254.6 224 68.3
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 2.6e-65 252.7 152 86.8
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 2.6e-65 252.7 152 86.8
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 4.5e-65 251.9 139 92.1
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 6.4e-64 248.1 152 85.5
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 6.4e-64 248.1 152 85.5
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 6.4e-64 248.1 153 84.3
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 6.4e-64 248.1 153 84.3
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 3.2e-63 245.7 152 84.9
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 3.2e-63 245.7 152 84.2
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 5.4e-63 245.0 153 83.7
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 9.3e-63 244.2 153 83.7
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 9.3e-63 244.2 153 83.7
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 7.4e-60 234.6 147 83.0
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 2.1e-59 233.0 144 84.0
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 3.6e-59 232.3 156 81.4
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 3.6e-59 232.3 156 81.4
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 6.2e-59 231.5 147 83.0
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.4e-58 230.3 147 82.3
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.8e-58 229.9 153 78.4
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.8e-58 229.9 122 95.1
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.1e-58 229.2 205 66.3
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 4.0e-58 228.8 147 81.6
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 4.0e-58 228.8 184 72.3
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 9.0e-58 227.6 122 94.3
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 1.5e-57 226.9 136 84.6
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 2.6e-57 226.1 146 81.5
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 4.5e-57 225.3 167 73.7
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 1.4e-55 220.3 138 83.3
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.9e-55 219.9 128 89.8
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 4.3e-52 208.8 139 80.6
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 4.3e-52 208.8 139 80.6
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 4.3e-52 208.8 139 80.6
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 1.1e-50 204.1 164 70.1
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 2.4e-50 203.0 139 77.7
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 2.4e-50 203.0 140 75.0
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 5.3e-50 201.8 112 92.0
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 6.9e-50 201.4 112 92.0
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.7e-48 196.8 109 92.7
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.9e-48 196.1 130 78.5
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.8e-48 195.7 109 90.8
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 3.2e-47 192.6 119 84.0
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 5.5e-47 191.8 113 85.0
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 1.9e-44 183.3 100 92.0
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.8e-43 178.7 143 69.2
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.7e-40 170.2 154 67.5
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 2.5e-39 166.4 143 67.8
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 2.7e-38 162.9 116 74.1
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 5.3e-34 148.7 81 95.1
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 1.3e-32 144.1 81 88.9
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 1.5e-28 130.6 73 91.8
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 2.6e-25 119.8 76 82.9
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 1.7e-24 117.1 65 90.8
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 1.7e-24 117.1 72 83.3
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 6.5e-24 115.2 94 69.1
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 6.5e-24 115.2 94 69.1
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 3.2e-23 112.8 95 74.7
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.1e-22 108.6 79 72.2
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 7.9e-22 108.2 63 96.8
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 7.9e-22 108.2 63 96.8
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.9e-21 105.9 63 95.2
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.9e-21 105.9 63 95.2
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 3.9e-21 105.9 63 95.2
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 3.9e-21 105.9 63 95.2
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 3.9e-21 105.9 63 95.2
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 3.9e-21 105.9 68 91.2
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 3.9e-21 105.9 68 91.2
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 3.9e-21 105.9 68 91.2
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 3.9e-21 105.9 63 95.2
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 6.7e-21 105.1 90 63.3
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 8.8e-21 104.8 63 93.7
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 8.8e-21 104.8 63 93.7
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 8.8e-21 104.8 63 93.7
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 8.8e-21 104.8 63 93.7
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 1.1e-20 104.4 63 95.2
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 1.1e-20 104.4 63 95.2
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 1.1e-20 104.4 63 95.2
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 1.5e-20 104.0 63 87.3
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 2.0e-20 103.6 68 89.7
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 2.0e-20 103.6 68 89.7
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 2.6e-20 103.2 63 92.1
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 2.6e-20 103.2 63 92.1
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 2.6e-20 103.2 63 92.1
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 5.7e-20 102.1 97 70.1
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 7.4e-20 101.7 97 70.1
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 7.4e-20 101.7 97 70.1
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 7.4e-20 101.7 97 70.1
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 7.4e-20 101.7 97 70.1
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 7.4e-20 101.7 63 92.1
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 9.7e-20 101.3 63 92.1
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 9.7e-20 101.3 63 92.1
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 9.7e-20 101.3 63 92.1
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-19 100.9 58 82.8
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 1.3e-19 100.9 77 76.6
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 1.7e-19 100.5 63 92.1
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 1.7e-19 100.5 63 92.1
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 1.7e-19 100.5 63 92.1
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 2.2e-19 100.1 56 87.5
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 2.2e-19 100.1 63 90.5
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 3.7e-19 99.4 67 86.6
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 3.7e-19 99.4 63 90.5
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.8e-18 97.1 68 76.5
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 2.4e-18 96.7 168 44.0
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 3.1e-18 96.3 61 90.2
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 7.7e-17 91.7 54 96.3
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 1.0e-16 91.3 52 88.5
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 2.9e-16 89.7 54 87.0
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.1e-15 87.8 64 78.1
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 4.2e-15 85.9 51 94.1
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 4.7e-14 82.4 43 95.3
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 6.1e-14 82.0 63 79.4
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 6.7e-13 78.6 68 72.1
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 4.4e-12 75.9 45 93.3
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 7.5e-12 75.1 54 77.8
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 1.7e-11 73.9 47 89.4
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.7e-11 73.9 45 86.7
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.2e-11 73.6 83 53.0
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 4.1e-10 69.3 44 88.6
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.3e-10 68.9 38 86.8
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 9.1e-10 68.2 44 88.6
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 7.7e-09 65.1 42 88.1
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 7.7e-09 65.1 41 90.2
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 7.7e-09 65.1 43 72.1
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 1.3e-08 64.3 39 76.9
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.2e-08 63.5 60 58.3
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 6.5e-08 62.0 43 81.4
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 2.5e-07 60.1 32 93.8
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.7e-06 55.8 40 77.5


User provided reference genes

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