Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 3.2e-153 545.0 272 100.0
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.1e-117 426.0 265 78.9
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.2e-112 410.2 295 70.5
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.1e-100 367.5 288 65.3
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 3.9e-95 352.1 288 62.5
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 7.4e-94 347.8 287 61.3
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 4.8e-93 345.1 288 61.5
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.6e-91 340.1 263 64.6
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 4.5e-91 338.6 287 59.2
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 1.3e-90 337.0 254 64.6
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.8e-90 335.5 291 60.5
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 8.5e-90 334.3 288 60.4
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.5e-89 333.6 249 65.9
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 2.5e-89 332.8 248 65.3
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 4.2e-89 332.0 290 59.0
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 7.2e-89 331.3 288 59.4
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 9.4e-89 330.9 244 66.0
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 9.4e-89 330.9 289 59.9
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.6e-88 330.1 289 60.2
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.6e-88 328.9 255 63.1
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 6.1e-88 328.2 289 58.5
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.0e-87 327.4 246 64.2
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 2.3e-87 326.2 285 57.9
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 2.3e-87 326.2 273 60.1
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 3.0e-87 325.9 285 58.2
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 8.8e-87 324.3 230 70.0
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 8.8e-87 324.3 230 70.0
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 8.8e-87 324.3 246 64.2
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 1.5e-86 323.6 290 57.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.5e-86 323.6 238 67.2
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 3.3e-86 322.4 248 64.5
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.4e-86 322.0 262 61.5
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 7.5e-86 321.2 267 61.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 9.7e-86 320.9 248 64.1
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.7e-85 320.1 288 55.6
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 4.8e-85 318.5 255 60.0
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.1e-84 317.4 285 57.9
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.8e-84 316.6 280 57.9
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 2.4e-84 316.2 266 59.8
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 2.4e-84 316.2 275 58.5
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 3.1e-84 315.8 285 57.5
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.1e-84 315.8 319 53.3
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 4.1e-84 315.5 245 62.4
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 7.0e-84 314.7 283 56.2
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 7.0e-84 314.7 291 58.8
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.2e-83 313.9 295 56.3
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 2.0e-83 313.2 290 56.9
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 2.0e-83 313.2 281 55.9
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.7e-83 312.8 289 56.1
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 4.5e-83 312.0 284 54.9
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 5.9e-83 311.6 248 61.7
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.3e-82 310.5 245 62.9
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.3e-82 310.5 245 62.9
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.3e-82 310.5 247 62.8
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 8.5e-82 307.8 273 57.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 8.5e-82 307.8 241 63.5
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.1e-81 307.4 229 66.4
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.5e-81 306.2 273 57.9
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 5.5e-81 305.1 230 65.7
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 7.2e-81 304.7 247 59.9
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 7.2e-81 304.7 269 58.7
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 9.4e-81 304.3 248 61.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 9.4e-81 304.3 247 62.3
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 9.4e-81 304.3 280 56.1
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.2e-80 303.9 279 55.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.7e-80 302.0 253 60.5
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.7e-80 302.0 253 60.5
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 6.1e-80 301.6 264 56.1
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.8e-79 300.1 288 54.5
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 3.0e-79 299.3 257 56.8
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 4.0e-79 298.9 253 60.5
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.6e-78 296.2 287 52.3
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 9.8e-78 294.3 245 59.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 9.8e-78 294.3 284 54.2
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.3e-77 293.9 263 57.0
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 4.8e-77 292.0 288 53.8
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.1e-76 290.8 264 57.6
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 3.1e-76 289.3 288 53.1
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 5.4e-76 288.5 247 58.7
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 7.0e-76 288.1 277 53.8
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.0e-74 284.3 276 52.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.3e-74 283.9 255 57.6
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 2.2e-74 283.1 252 56.3
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.2e-74 283.1 230 62.2
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 2.5e-73 279.6 253 54.9
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 8.0e-72 274.6 207 64.7
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 8.0e-72 274.6 207 64.7
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 8.0e-72 274.6 249 55.4
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 8.8e-71 271.2 284 52.1
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 5.7e-70 268.5 256 52.0
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 9.2e-68 261.2 245 55.9
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 9.8e-62 241.1 246 49.6
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 5.9e-59 231.9 243 48.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 9.8e-54 214.5 151 70.2
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.1e-52 211.1 269 44.6
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 7.0e-52 208.4 255 47.8
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 9.2e-52 208.0 221 50.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.0e-50 203.0 261 44.1
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 5.6e-49 198.7 180 56.1
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.6e-46 189.9 215 46.0
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 2.4e-44 183.3 249 43.8
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 2.8e-40 169.9 176 52.8
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.7e-34 150.6 173 48.0
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 7.3e-33 145.2 263 35.0
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 3.1e-31 139.8 244 34.8
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 5.2e-31 139.0 143 51.7
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 6.9e-31 138.7 105 63.8
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 1.2e-30 137.9 113 60.2
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 4.4e-30 136.0 89 71.9
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 2.9e-29 133.3 239 36.8
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 5.4e-28 129.0 90 65.6
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.4e-28 129.0 89 68.5
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 7.8e-27 125.2 92 64.1
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 3.6e-24 116.3 100 58.0
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 6.2e-24 115.5 100 58.0
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 3.8e-21 106.3 157 43.9
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.9e-20 104.0 68 72.1
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 2.3e-18 97.1 115 44.3
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.1e-18 95.9 57 77.2
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 8.7e-18 95.1 128 43.8
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 3.3e-17 93.2 183 33.9
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 4.8e-16 89.4 173 30.6
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 2.9e-13 80.1 86 50.0
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.9e-12 77.4 149 30.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 5.5e-12 75.9 116 38.8
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 3.5e-11 73.2 78 46.2
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 2.3e-10 70.5 93 41.9
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 2.4e-07 60.5 133 30.1
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.0e-06 57.4 37 64.9
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 7.6e-06 55.5 61 47.5
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 1.0e-05 55.1 50 58.0


User provided reference genes

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