Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g111010 Amaranthus hybridus HOM05D004851 ORTHO05D006091 2.5e-226 788.5 405 100.0
AUR62028634 Chenopodium quinoa HOM05D004851 ORTHO05D006091 4.6e-124 448.7 468 54.7
EL10Ac5g10580 Beta vulgaris HOM05D004851 ORTHO05D006091 3.2e-117 426.0 516 49.8
AUR62008058 Chenopodium quinoa HOM05D004851 ORTHO05D006091 4.6e-116 422.2 518 50.0
CSS0035891 Camellia sinensis var. sinensis HOM05D004851 ORTHO05D006091 1.7e-86 323.9 525 40.6
CiPaw.06G036900 Carya illinoinensis HOM05D004851 ORTHO05D006091 1.1e-85 321.2 517 42.2
Actinidia08788 Actinidia chinensis HOM05D004851 ORTHO05D006091 1.4e-85 320.9 525 41.0
TAR628G1149 Trochodendron aralioides HOM05D004851 ORTHO05D006091 3.2e-85 319.7 495 41.2
Atru.chr11.646 Acer truncatum HOM05D004851 ORTHO05D006091 9.4e-85 318.2 532 41.0
unitig_736.g22500 Utricularia gibba HOM05D004851 ORTHO05D006091 1.6e-84 317.4 400 48.8
Solyc11g008710.2 Solanum lycopersicum HOM05D004851 ORTHO05D006091 2.7e-84 316.6 498 41.6
PGSC0003DMG402016246 Solanum tuberosum HOM05D004851 ORTHO05D006091 8.0e-84 315.1 489 41.5
RcHm_v2.0_Chr1g0384661 Rosa chinensis HOM05D004851 ORTHO05D006091 1.0e-83 314.7 473 42.3
PGR031G1011 Punica granatum HOM05D004851 ORTHO05D006091 1.4e-83 314.3 514 41.4
Hma1.2p1_2196F.1_g316860 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.8e-83 313.9 443 43.3
Sopen11g004490 Solanum pennellii HOM05D004851 ORTHO05D006091 2.3e-83 313.5 498 41.4
MD06G1015700 Malus domestica HOM05D004851 ORTHO05D006091 3.0e-83 313.2 483 42.7
Dinv29371 Davidia involucrata HOM05D004851 ORTHO05D006091 5.2e-83 312.4 456 42.8
Prupe.2G329900 Prunus persica HOM05D004851 ORTHO05D006091 8.8e-83 311.6 525 41.5
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 1.1e-82 311.2 445 44.9
Rhsim03G0240200 Rhododendron simsii HOM05D004851 ORTHO05D006091 1.5e-82 310.8 514 40.7
Lj3A883T54 Lonicera japonica HOM05D004851 ORTHO05D006091 2.0e-82 310.5 460 43.0
MBI07_g19429_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 5.7e-82 308.9 498 41.8
Potri.013G076200 Populus trichocarpa HOM05D004851 ORTHO05D006091 5.7e-82 308.9 533 40.7
MBI10_g03402_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 7.4e-82 308.5 498 42.8
Manes.08G159500 Manihot esculenta HOM05D004851 ORTHO05D006091 9.7e-82 308.1 518 42.3
Lsat_1_v5_gn_3_23200 Lactuca sativa HOM05D004851 ORTHO05D006091 1.3e-81 307.8 527 39.3
Nitab4.5_0005243g0030 Nicotiana tabacum HOM05D004851 ORTHO05D006091 1.3e-81 307.8 452 43.6
MSTRG.27417 Avicennia marina HOM05D004851 ORTHO05D006091 2.2e-81 307.0 463 43.8
Sc17g0001530 Simmondsia chinensis HOM05D004851 ORTHO05D006091 3.7e-81 306.2 511 41.7
Psat7g046360 Pisum sativum HOM05D004851 ORTHO05D006091 4.8e-81 305.8 499 41.1
FAN10G2942 Fragaria x ananassa HOM05D004851 ORTHO05D006091 1.8e-80 303.9 453 42.4
TWI60G1536 Tripterygium wilfordii HOM05D004851 ORTHO05D006091 2.4e-80 303.5 470 41.5
Sabra13G0065400 Salix brachista HOM05D004851 ORTHO05D006091 4.1e-80 302.8 536 39.7
CANSAT01G3202 Cannabis sativa HOM05D004851 ORTHO05D006091 5.3e-80 302.4 521 41.5
PSO170G2140 Papaver somniferum HOM05D004851 ORTHO05D006091 5.3e-80 302.4 467 40.7
Cfa016106 Carpinus fangiana HOM05D004851 ORTHO05D006091 1.2e-79 301.2 484 41.9
PSO017G3120 Papaver somniferum HOM05D004851 ORTHO05D006091 2.0e-79 300.4 467 40.5
ATR0787G085 Amborella trichopoda HOM05D004851 ORTHO05D006091 4.5e-79 299.3 528 38.4
FAN01G0391 Fragaria x ananassa HOM05D004851 ORTHO05D006091 1.3e-78 297.7 455 41.8
FvH4_7g34290 Fragaria vesca HOM05D004851 ORTHO05D006091 2.2e-78 297.0 455 41.8
Ca_17637_v3 Cicer arietinum L. HOM05D004851 ORTHO05D006091 2.9e-78 296.6 475 40.8
Duzib106G1281 Durio zibethinus HOM05D004851 ORTHO05D006091 5.0e-78 295.8 490 40.6
Duzib128G1329 Durio zibethinus HOM05D004851 ORTHO05D006091 5.0e-78 295.8 444 41.9
COL.COLO4_12970 Corchorus olitorius HOM05D004851 ORTHO05D006091 6.5e-78 295.4 459 41.4
CsaV3_2G035950 Cucumis sativus L. HOM05D004851 ORTHO05D006091 6.5e-78 295.4 445 41.3
Lj3g0009966 Lotus japonicus HOM05D004851 ORTHO05D006091 6.5e-78 295.4 452 42.9
Thecc.05G226800 Theobroma cacao HOM05D004851 ORTHO05D006091 6.5e-78 295.4 482 40.5
LjContig00389g0015553 Lotus japonicus HOM05D004851 ORTHO05D006091 2.5e-77 293.5 452 42.5
FAN03G1643 Fragaria x ananassa HOM05D004851 ORTHO05D006091 3.2e-77 293.1 453 41.5
Peaxi162Scf00254g00512 Petunia axillaris HOM05D004851 ORTHO05D006091 3.2e-77 293.1 477 40.5
Gohir.D13G162900 Gossypium hirsutum HOM05D004851 ORTHO05D006091 4.2e-77 292.7 527 38.1
MD14G1141700 Malus domestica HOM05D004851 ORTHO05D006091 4.2e-77 292.7 487 40.9
VMungo0540G0464 Vigna mungo HOM05D004851 ORTHO05D006091 4.2e-77 292.7 496 39.7
ECA246G2460 Erigeron canadensis HOM05D004851 ORTHO05D006091 5.5e-77 292.4 412 43.2
CAN.G691.8 Capsicum annuum HOM05D004851 ORTHO05D006091 9.4e-77 291.6 411 43.6
Eucgr.A00913 Eucalyptus grandis HOM05D004851 ORTHO05D006091 9.4e-77 291.6 446 40.8
HanXRQChr08g0228141 Helianthus annuus HOM05D004851 ORTHO05D006091 9.4e-77 291.6 420 42.9
Medtr8g093680 Medicago truncatula HOM05D004851 ORTHO05D006091 1.6e-76 290.8 498 39.0
TPR.G37402 Trifolium pratense HOM05D004851 ORTHO05D006091 1.6e-76 290.8 453 41.1
Aa31LG2G2120 Aethionema arabicum HOM05D004851 ORTHO05D006091 2.7e-76 290.0 514 38.7
Cc09_g04170 Coffea canephora HOM05D004851 ORTHO05D006091 2.7e-76 290.0 408 42.9
Sed0012488 Sechium edule HOM05D004851 ORTHO05D006091 2.7e-76 290.0 446 41.3
Lalb_Chr01g0022101 Lupinus albus HOM05D004851 ORTHO05D006091 4.7e-76 289.3 503 38.8
CARHR056280 Cardamine hirsuta HOM05D004851 ORTHO05D006091 6.1e-76 288.9 475 39.6
Glyma.04G079800 Glycine max HOM05D004851 ORTHO05D006091 6.1e-76 288.9 450 42.4
Nitab4.5_0001003g0170 Nicotiana tabacum HOM05D004851 ORTHO05D006091 8.0e-76 288.5 466 41.0
MELO3C024747.2 Cucumis melo HOM05D004851 ORTHO05D006091 1.4e-75 287.7 493 38.5
arahy.Tifrunner.gnm1.ann1.NF9HU2 Arachis hypogaea HOM05D004851 ORTHO05D006091 2.3e-75 287.0 493 40.2
arahy.Tifrunner.gnm1.ann1.VYGS4N Arachis hypogaea HOM05D004851 ORTHO05D006091 2.3e-75 287.0 493 40.2
GSVIVG01020716001 Vitis vinifera HOM05D004851 ORTHO05D006091 5.2e-75 285.8 410 43.4
Thhalv10002490m.g Eutrema salsugineum HOM05D004851 ORTHO05D006091 6.7e-75 285.4 514 38.5
Gohir.A13G158200 Gossypium hirsutum HOM05D004851 ORTHO05D006091 8.8e-75 285.0 532 38.2
A02p23990 Brassica napus HOM05D004851 ORTHO05D006091 1.5e-74 284.3 511 38.7
Nn4g24557 Nelumbo nucifera HOM05D004851 ORTHO05D006091 1.5e-74 284.3 473 39.5
Oeu010173.1 Olea europaea HOM05D004851 ORTHO05D006091 2.6e-74 283.5 473 40.8
SGA_v2.0_scaffold75G25015 Striga asiatica HOM05D004851 ORTHO05D006091 2.6e-74 283.5 532 37.6
Carub.0002s0996 Capsella rubella HOM05D004851 ORTHO05D006091 3.3e-74 283.1 477 39.0
HPP92_005346 Vanilla planifolia HOM05D004851 ORTHO05D006091 3.3e-74 283.1 511 37.8
C02p37840 Brassica napus HOM05D004851 ORTHO05D006091 4.4e-74 282.7 488 39.5
DCAR_008779 Daucus carota HOM05D004851 ORTHO05D006091 4.4e-74 282.7 415 42.9
THA.LOC104823793 Tarenaya hassleriana HOM05D004851 ORTHO05D006091 5.7e-74 282.3 458 40.2
AT1G64880 Arabidopsis thaliana HOM05D004851 ORTHO05D006091 2.2e-73 280.4 477 38.4
BolC2t09800H Brassica oleracea HOM05D004851 ORTHO05D006091 2.2e-73 280.4 460 40.4
Phvul.009G105500 Phaseolus vulgaris HOM05D004851 ORTHO05D006091 2.2e-73 280.4 460 40.9
BcaB05g23595 Brassica carinata HOM05D004851 ORTHO05D006091 3.7e-73 279.6 516 37.6
BraA02t07394Z Brassica rapa HOM05D004851 ORTHO05D006091 3.7e-73 279.6 511 38.4
BcaC03g16030 Brassica carinata HOM05D004851 ORTHO05D006091 4.8e-73 279.3 488 39.3
arahy.Tifrunner.gnm1.ann1.UCI1EL Arachis hypogaea HOM05D004851 ORTHO05D006091 8.2e-73 278.5 477 39.8
AL2G19340 Arabidopsis lyrata HOM05D004851 ORTHO05D006091 1.1e-72 278.1 477 38.4
Sp5g19120 Schrenkiella parvula HOM05D004851 ORTHO05D006091 2.4e-72 276.9 485 39.0
Aqoxy2G03682 Aquilegia oxysepala HOM05D004851 ORTHO05D006091 3.5e-71 273.1 431 42.0
Hund19699 Selenicereus undatus HOM05D004851 ORTHO05D006091 1.7e-70 270.8 470 40.0
SalBow1G5096 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.2e-70 270.4 518 37.8
Glyma.06G081400 Glycine max HOM05D004851 ORTHO05D006091 3.6e-68 263.1 448 40.8
Os02g0102400 Oryza sativa ssp. japonica HOM05D004851 ORTHO05D006091 6.8e-67 258.8 412 38.1
CDE02G1790 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 7.5e-66 255.4 352 41.8
ECA246G3904 Erigeron canadensis HOM05D004851 ORTHO05D006091 2.2e-65 253.8 517 34.8
vmacro07474 Vaccinium macrocarpon HOM05D004851 ORTHO05D006091 1.1e-64 251.5 623 32.7
Gorai.013G185100 Gossypium raimondii HOM05D004851 ORTHO05D006091 2.4e-64 250.4 506 35.8
arahy.Tifrunner.gnm1.ann1.BXG275 Arachis hypogaea HOM05D004851 ORTHO05D006091 3.5e-63 246.5 423 39.5
PSO764G0174 Papaver somniferum HOM05D004851 ORTHO05D006091 1.3e-62 244.6 511 35.2
Cpa.g.sc34.168 Carica papaya HOM05D004851 ORTHO05D006091 1.1e-61 241.5 404 40.1
CDE06G0392 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 1.2e-60 238.0 399 37.8
SEGI_25717 Sequoiadendron giganteum HOM05D004851 ORTHO05D006091 1.4e-59 234.6 343 40.8
Zm00001eb229290 Zea mays HOM05D004851 ORTHO05D006091 1.5e-53 214.5 376 35.6
Haze_00351 Corylus avellana HOM05D004851 ORTHO05D006091 4.4e-50 203.0 382 37.7
Hma1.2p1_2196F.1_g316870 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.6e-47 194.5 160 62.5
SalBow1G4565 Salvia bowleyana HOM05D004851 ORTHO05D006091 6.6e-46 189.1 277 39.7
MD07G1311200 Malus domestica HOM05D004851 ORTHO05D006091 1.5e-45 188.0 462 32.5
ClCG02G007790 Citrullus lanatus HOM05D004851 ORTHO05D006091 4.1e-40 169.9 396 33.1
Actinidia27036 Actinidia chinensis HOM05D004851 ORTHO05D006091 6.0e-39 166.0 280 40.0
SalBow1G6742 Salvia bowleyana HOM05D004851 ORTHO05D006091 3.6e-36 156.8 121 66.1
SalBow1G7753 Salvia bowleyana HOM05D004851 ORTHO05D006091 3.6e-36 156.8 121 66.1
Hma1.2p1_2196F.1_g316850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 6.2e-36 156.0 186 46.8
Hma1.2p1_3283F.1_g334850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 6.2e-36 156.0 186 46.8
PSO339G3159 Papaver somniferum HOM05D004851 ORTHO05D006091 1.8e-35 154.5 249 39.4
SalBow1G3109 Salvia bowleyana HOM05D004851 ORTHO05D006091 5.2e-35 152.9 134 60.4
RcHm_v2.0_Chr3g0482791 Rosa chinensis HOM05D004851 ORTHO05D006091 6.4e-33 146.0 89 76.4
Oeu036566.1 Olea europaea HOM05D004851 ORTHO05D006091 7.8e-31 139.0 130 57.7
Mapoly0098s0036 Marchantia polymorpha HOM05D004851 ORTHO05D006091 1.8e-27 127.9 174 39.1
Pp3c8_16260 Physcomitrium patens HOM05D004851 ORTHO05D006091 1.4e-24 118.2 159 38.4
AagrBONN_evm.TU.Sc2ySwM_228.993 Anthoceros agrestis HOM05D004851 ORTHO05D006091 1.3e-22 111.7 158 39.9
CBR_g50476 Chara braunii HOM05D004851 ORTHO05D006091 3.9e-22 110.2 157 38.9
Haze_00352 Corylus avellana HOM05D004851 ORTHO05D006091 1.6e-20 104.8 108 55.6
MCO11G545 Micromonas commoda HOM05D004851 ORTHO05D006091 4.7e-20 103.2 156 37.8
ClCG02G007800 Citrullus lanatus HOM05D004851 ORTHO05D006091 1.1e-19 102.1 107 53.3
SalBow1G4067 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.1e-19 102.1 102 55.9
MBI14_g09475_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D004104 2.6e-18 97.4 108 50.9
SMO361G0506 Selaginella moellendorffii HOM05D004851 ORTHO05D006091 8.4e-17 92.4 142 33.8
MBI11_g24763_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 1.7e-14 84.7 48 79.2
MBI12_g19411_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D011619 1.7e-14 84.7 53 71.7
HanXRQChr17g0540681 Helianthus annuus HOM05D004851 ORTHO05D006091 6.9e-11 72.8 56 67.9
MBI09_g39943_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 4.9e-09 66.6 37 78.4
MBI09_g43839_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 4.9e-09 66.6 45 71.1
MBI10_g06902_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 1.6e-07 61.6 40 70.0
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 2.1e-07 61.2 101 35.6
RcHm_v2.0_Chr3g0482781 Rosa chinensis HOM05D004851 ORTHO05D006091 3.5e-07 60.5 41 70.7
MBI12_g39868_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 2.3e-06 57.8 54 50.0
SalBow1G8063 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.3e-06 57.8 47 51.1
MBI12_g31452_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 3.0e-06 57.4 37 70.3


User provided reference genes

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