Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 1.9e-190 669.1 349 100.0
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 1.7e-151 539.7 343 73.8
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 1.6e-144 516.5 349 71.9
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 1.7e-143 513.1 349 70.2
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 9.1e-129 464.2 349 61.9
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 5.0e-127 458.4 348 63.2
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 1.5e-126 456.8 344 63.1
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 2.8e-125 452.6 343 63.8
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 8.0e-125 451.1 356 60.7
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 1.0e-124 450.7 349 62.5
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 1.4e-124 450.3 346 61.3
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 3.0e-124 449.1 346 62.1
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 5.7e-123 444.9 345 60.6
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 5.7e-123 444.9 347 59.7
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 7.5e-123 444.5 345 63.5
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 9.8e-123 444.1 347 63.1
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 2.8e-122 442.6 350 66.3
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 2.8e-122 442.6 347 60.5
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 8.3e-122 441.0 355 60.3
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 1.1e-121 440.7 347 60.5
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 1.8e-121 439.9 346 61.0
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 2.4e-121 439.5 348 60.9
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 5.4e-121 438.3 347 62.2
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 5.4e-121 438.3 347 62.2
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 5.4e-121 438.3 350 59.7
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 5.4e-121 438.3 347 60.2
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 7.0e-121 438.0 350 60.3
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 7.0e-121 438.0 346 61.6
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 1.6e-120 436.8 346 65.6
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 1.6e-120 436.8 350 63.7
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 1.6e-120 436.8 346 59.2
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 2.7e-120 436.0 349 67.6
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 3.5e-120 435.6 346 60.7
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 5.9e-120 434.9 347 62.0
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 7.8e-120 434.5 398 54.3
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 4.3e-118 428.7 346 58.1
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 4.3e-118 428.7 345 59.4
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 4.3e-118 428.7 346 60.4
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 7.3e-118 427.9 343 62.4
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 2.8e-117 426.0 346 61.6
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 3.6e-117 425.6 349 65.9
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 3.6e-117 425.6 345 59.1
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 6.1e-117 424.9 351 62.7
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 1.8e-116 423.3 348 63.5
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 8.9e-116 421.0 345 59.1
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 1.2e-115 420.6 347 65.4
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 3.4e-115 419.1 346 65.6
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 7.5e-115 417.9 347 66.0
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 2.9e-114 416.0 347 65.1
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 3.7e-114 415.6 351 59.8
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 3.7e-114 415.6 346 58.4
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 6.4e-114 414.8 349 66.5
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 6.4e-114 414.8 350 55.4
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 2.4e-113 412.9 345 58.0
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 2.4e-113 412.9 347 64.3
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 4.1e-113 412.1 346 63.9
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 2.7e-112 409.5 346 63.0
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 5.9e-112 408.3 352 58.0
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 8.6e-111 404.4 351 63.0
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 1.9e-110 403.3 350 57.1
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.6e-109 400.2 351 62.4
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.1e-109 399.8 343 58.3
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 4.7e-109 398.7 347 62.8
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.0e-108 397.5 347 58.8
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 3.1e-108 396.0 347 61.4
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 6.8e-108 394.8 338 57.7
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 8.9e-108 394.4 346 61.3
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 1.2e-107 394.0 347 62.8
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 2.6e-107 392.9 348 60.9
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 2.6e-107 392.9 347 61.4
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 3.4e-107 392.5 347 62.8
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 1.3e-106 390.6 348 54.0
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 1.3e-106 390.6 347 63.7
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 1.3e-106 390.6 347 62.5
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 2.2e-106 389.8 351 54.4
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 4.9e-106 388.7 343 62.1
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 1.9e-105 386.7 348 55.2
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 7.0e-105 384.8 348 54.0
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 1.6e-104 383.6 313 64.5
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 3.5e-104 382.5 350 55.4
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 3.5e-104 382.5 349 56.7
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 7.8e-104 381.3 351 61.5
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 1.3e-103 380.6 344 54.7
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 8.6e-103 377.9 348 53.7
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 4.0e-100 369.0 347 53.3
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 8.9e-100 367.9 346 60.4
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 8.9e-100 367.9 346 60.4
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 8.9e-100 367.9 346 60.4
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 1.2e-99 367.5 346 59.8
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 5.8e-99 365.2 351 61.3
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 4.9e-98 362.1 350 60.3
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 5.4e-97 358.6 331 60.1
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 2.1e-96 356.7 346 59.5
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 2.3e-95 353.2 349 53.0
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 8.6e-95 351.3 347 54.2
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 3.1e-92 342.8 350 48.6
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 5.4e-89 332.0 351 54.4
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 5.1e-87 325.5 226 69.5
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 9.0e-84 314.7 349 46.1
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 1.2e-83 314.3 277 64.6
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 1.9e-78 297.0 242 57.9
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 6.4e-74 282.0 224 59.4
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 4.2e-73 279.3 222 59.5
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 3.5e-72 276.2 222 69.8
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 4.6e-72 275.8 347 39.5
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 2.3e-71 273.5 223 66.8
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 2.5e-70 270.0 222 57.2
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 5.6e-70 268.9 218 66.5
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 2.4e-68 263.5 209 59.3
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 5.3e-68 262.3 381 38.6
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 6.9e-68 261.9 220 51.4
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.7e-66 257.3 209 67.0
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.7e-66 257.3 209 67.0
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 1.3e-63 247.7 344 39.2
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 5.1e-63 245.7 225 55.1
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 1.9e-62 243.8 184 62.0
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 1.8e-55 220.7 377 33.4
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 2.0e-51 207.2 320 39.1
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 5.9e-51 205.7 188 55.9
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 2.2e-50 203.8 182 68.1
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.5e-49 200.3 188 54.8
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 3.6e-48 196.4 189 50.8
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 1.4e-44 184.5 511 28.4
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 9.1e-44 181.8 202 44.6
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 1.3e-42 177.9 217 46.1
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 1.2e-35 154.8 427 32.3
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 2.7e-32 143.7 426 28.9
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 1.5e-30 137.9 124 53.2
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 2.9e-26 123.6 103 58.3
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 6.1e-24 115.9 85 60.0
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.6e-22 110.5 140 45.0
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 8.2e-21 105.5 85 56.5
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 7.0e-20 102.4 97 56.7
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 2.7e-19 100.5 67 64.2
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.3e-15 87.4 99 49.5
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 1.8e-12 77.8 97 43.3


User provided reference genes

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