Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 6.9e-157 557.4 305 100.0
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.2e-126 456.1 311 75.9
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.3e-120 436.0 312 75.3
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 7.0e-109 397.9 310 71.9
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.9e-107 392.1 311 68.2
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.8e-104 381.3 308 70.1
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.2e-103 380.6 308 70.1
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 3.7e-102 375.6 308 65.3
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 6.4e-102 374.8 312 68.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 7.0e-101 371.3 298 68.8
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 3.5e-100 369.0 307 68.1
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 3.0e-99 365.9 307 68.1
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 4.3e-98 362.1 307 65.1
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 7.3e-98 361.3 310 67.4
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 7.3e-98 361.3 305 68.2
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.1e-97 359.8 310 67.4
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 2.1e-97 359.8 305 68.2
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.8e-97 359.4 310 67.4
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 2.3e-96 356.3 310 66.5
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.5e-95 353.6 300 70.3
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 4.9e-94 348.6 212 83.5
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 1.4e-93 347.1 313 69.0
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.4e-93 346.3 302 70.9
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 3.2e-93 345.9 305 67.2
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 7.1e-93 344.7 307 68.7
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 7.1e-93 344.7 310 67.1
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 7.1e-93 344.7 332 62.0
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.5e-92 342.4 305 69.2
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 4.6e-92 342.0 245 73.9
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.0e-91 340.9 306 66.3
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.7e-91 340.1 254 74.8
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.7e-91 340.1 221 76.0
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 1.1e-90 337.4 302 67.2
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.5e-90 336.3 308 65.6
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 3.3e-90 335.9 302 67.2
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.3e-90 335.9 272 66.9
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 7.3e-90 334.7 220 75.9
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.2e-89 334.0 215 76.7
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.2e-89 334.0 215 76.3
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 4.7e-89 332.0 260 73.1
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 8.1e-89 331.3 208 83.2
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 8.1e-89 331.3 218 75.7
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.4e-88 330.5 309 67.3
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.8e-88 330.1 207 84.5
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 2.3e-88 329.7 207 85.0
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 5.2e-88 328.6 314 62.4
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 2.6e-87 326.2 309 67.0
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 3.4e-87 325.9 221 79.2
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 5.8e-87 325.1 208 77.4
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.7e-86 323.6 215 74.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 2.2e-86 323.2 211 74.9
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.9e-86 322.8 301 65.8
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 4.9e-86 322.0 254 68.9
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.1e-85 320.9 299 67.2
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.1e-85 320.9 317 62.5
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.1e-85 320.9 309 63.1
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.4e-85 319.7 216 80.1
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 3.2e-85 319.3 305 62.6
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 3.2e-85 319.3 218 78.9
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.1e-85 318.9 221 78.3
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.4e-85 318.5 222 72.5
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 7.1e-85 318.2 302 63.2
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 9.2e-85 317.8 218 78.4
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.6e-84 317.0 330 59.4
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.1e-84 316.6 207 81.6
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 2.1e-84 316.6 305 62.0
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.5e-84 315.8 217 77.9
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 6.0e-84 315.1 208 81.2
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.0e-84 315.1 208 81.2
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 6.0e-84 315.1 213 79.8
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.7e-83 313.5 248 69.0
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.1e-83 312.0 208 80.8
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.9e-82 310.1 209 80.4
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.6e-82 308.5 195 76.9
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 9.6e-82 307.8 217 71.4
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.4e-80 303.9 224 70.1
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.5e-79 300.4 212 68.9
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 2.0e-79 300.1 311 55.0
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.8e-79 298.5 225 75.1
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-78 297.4 189 78.3
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 2.2e-78 296.6 217 72.4
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.2e-78 296.6 302 58.9
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 2.2e-78 296.6 215 66.5
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 6.4e-78 295.0 216 73.6
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.4e-77 293.9 306 58.8
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 3.2e-77 292.7 308 62.3
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.6e-76 290.4 268 60.1
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 2.1e-76 290.0 210 71.9
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.7e-75 287.0 268 63.4
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.5e-74 283.9 183 77.0
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 5.6e-74 282.0 215 67.9
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.3e-73 280.8 184 76.6
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.1e-73 280.0 216 63.4
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 1.8e-72 276.9 176 86.4
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.4e-72 276.6 206 71.8
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.5e-71 273.9 207 64.3
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 4.5e-71 272.3 144 88.2
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 4.5e-71 272.3 245 67.8
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.9e-69 266.9 211 64.0
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 9.3e-69 264.6 329 47.1
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.5e-66 256.5 217 67.7
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 6.2e-65 251.9 182 67.0
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 8.1e-65 251.5 207 61.8
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.3e-59 233.4 120 92.5
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 2.5e-50 203.4 148 79.1
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 4.1e-48 196.1 222 54.1
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.2e-45 185.3 142 68.3
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 5.1e-43 179.1 134 67.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.1e-32 144.8 185 44.9
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 7.7e-31 138.7 204 45.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.0e-27 128.3 179 46.4
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.3e-25 121.3 135 53.3
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 2.8e-25 120.2 181 54.1
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 3.7e-25 119.8 93 69.9
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.2e-23 114.8 110 57.3
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 7.7e-23 112.1 63 82.5
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 9.4e-21 105.1 95 58.9
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.7e-20 102.8 77 68.8
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.7e-17 94.4 180 32.8
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 6.3e-17 92.4 134 44.8
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 9.1e-16 88.6 55 74.5
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.9e-15 85.9 113 39.8
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 4.0e-11 73.2 61 62.3
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 9.8e-10 68.6 136 36.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.2e-09 67.4 150 33.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-08 65.1 165 32.1
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 5.4e-08 62.8 137 34.3
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 7.0e-08 62.4 137 34.3
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.2e-07 61.6 138 31.2
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.6e-07 61.2 136 32.4
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.0e-07 60.8 115 36.5
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 2.0e-07 60.8 136 31.6
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.5e-07 60.1 150 32.0
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 4.5e-07 59.7 156 34.0
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.9e-07 59.3 115 33.0
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 5.9e-07 59.3 30 90.0
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.3e-06 58.2 141 31.9
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.3e-06 58.2 136 30.9
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.7e-06 57.8 132 31.1
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.7e-06 57.8 147 29.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.3e-06 57.4 149 30.9
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.3e-06 57.4 119 31.1
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.9e-06 57.0 136 31.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.9e-06 57.0 136 30.9
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.9e-06 57.0 144 32.6
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.8e-06 56.6 104 34.6
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 3.8e-06 56.6 132 31.1
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 5.0e-06 56.2 132 31.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 5.0e-06 56.2 115 34.8
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 8.6e-06 55.5 132 31.1
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 8.6e-06 55.5 130 30.8
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 8.6e-06 55.5 134 28.4


User provided reference genes

Program Settings