Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.5e-46 189.1 93 100.0
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 4.3e-33 144.4 73 91.8
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.8e-32 141.7 73 90.4
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 3.6e-32 141.4 73 90.4
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 3.1e-31 138.3 73 87.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 2.0e-30 135.6 73 86.3
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 5.8e-30 134.0 73 87.7
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 9.8e-30 133.3 73 86.3
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.7e-29 132.5 73 83.6
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 4.9e-29 131.0 73 82.2
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 4.9e-29 131.0 73 82.2
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 4.9e-29 131.0 73 82.2
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 4.9e-29 131.0 73 84.9
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 6.4e-29 130.6 73 82.2
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 6.4e-29 130.6 73 83.6
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 6.4e-29 130.6 73 83.6
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 8.3e-29 130.2 73 80.8
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 1.1e-28 129.8 72 81.9
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-28 129.4 73 80.8
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.4e-28 129.4 73 80.8
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.4e-28 129.4 73 80.8
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 1.4e-28 129.4 73 80.8
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.9e-28 129.0 73 82.2
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.9e-28 129.0 73 80.8
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 2.4e-28 128.6 73 82.2
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 2.4e-28 128.6 73 82.2
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 3.2e-28 128.3 73 82.2
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 3.2e-28 128.3 73 80.8
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 3.2e-28 128.3 73 82.2
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 4.1e-28 127.9 73 80.8
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 5.4e-28 127.5 73 82.2
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 5.4e-28 127.5 73 82.2
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 5.4e-28 127.5 73 80.8
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 5.4e-28 127.5 73 79.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 5.4e-28 127.5 73 82.2
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 7.1e-28 127.1 73 79.5
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 7.1e-28 127.1 73 80.8
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 7.1e-28 127.1 73 80.8
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 7.1e-28 127.1 73 79.5
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 7.1e-28 127.1 73 79.5
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 9.2e-28 126.7 73 79.5
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.2e-27 126.3 73 76.7
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.2e-27 126.3 73 79.5
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.2e-27 126.3 73 82.2
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 1.6e-27 125.9 73 80.8
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 2.1e-27 125.6 73 79.5
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.1e-27 125.6 73 78.1
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.1e-27 125.6 73 79.5
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 2.7e-27 125.2 73 79.5
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 3.5e-27 124.8 73 78.1
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 6.0e-27 124.0 73 76.7
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 6.0e-27 124.0 73 78.1
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.0e-27 124.0 73 78.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 6.0e-27 124.0 73 78.1
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 7.8e-27 123.6 73 79.5
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 7.8e-27 123.6 73 76.7
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 7.8e-27 123.6 72 80.6
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 7.8e-27 123.6 73 76.7
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 7.8e-27 123.6 73 76.7
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.0e-26 123.2 73 79.5
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.0e-26 123.2 73 79.5
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.0e-26 123.2 73 79.5
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.0e-26 123.2 73 79.5
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.0e-26 123.2 73 79.5
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.3e-26 122.9 73 78.1
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.3e-26 122.9 73 78.1
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 1.7e-26 122.5 73 75.3
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.7e-26 122.5 73 79.5
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 1.7e-26 122.5 73 79.5
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.7e-26 122.5 73 76.7
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.7e-26 122.5 73 78.1
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 2.3e-26 122.1 73 78.1
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 2.3e-26 122.1 73 78.1
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 2.3e-26 122.1 73 78.1
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 2.3e-26 122.1 73 78.1
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 2.3e-26 122.1 73 76.7
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.0e-26 121.7 73 76.7
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 3.0e-26 121.7 73 78.1
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 3.0e-26 121.7 73 75.3
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 3.9e-26 121.3 73 74.0
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 3.9e-26 121.3 73 78.1
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 3.9e-26 121.3 73 76.7
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.9e-26 121.3 73 76.7
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.9e-26 121.3 72 77.8
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 3.9e-26 121.3 73 74.0
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.1e-26 120.9 72 77.8
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 5.1e-26 120.9 73 72.6
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 5.1e-26 120.9 73 74.0
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 5.1e-26 120.9 73 74.0
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 6.6e-26 120.6 73 74.0
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 6.6e-26 120.6 71 78.9
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 6.6e-26 120.6 73 76.7
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 8.6e-26 120.2 73 75.3
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 8.6e-26 120.2 73 76.7
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 8.6e-26 120.2 73 76.7
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.1e-25 119.8 73 75.3
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 1.1e-25 119.8 72 76.4
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.5e-25 119.4 73 76.7
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.5e-25 119.4 69 81.2
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.5e-25 119.4 73 72.6
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.9e-25 119.0 73 76.7
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.9e-25 119.0 73 76.7
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 2.5e-25 118.6 72 73.6
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.6e-25 117.5 73 76.7
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 7.3e-25 117.1 73 74.0
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 7.3e-25 117.1 73 74.0
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 7.3e-25 117.1 73 76.7
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 7.3e-25 117.1 70 80.0
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 9.5e-25 116.7 73 76.7
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.6e-24 115.9 73 71.2
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 2.8e-24 115.2 73 71.2
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 3.6e-24 114.8 73 74.0
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 6.2e-24 114.0 73 69.9
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 6.2e-24 114.0 73 71.2
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 6.2e-24 114.0 73 72.6
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.4e-23 112.8 73 68.5
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.5e-22 109.4 69 71.0
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.6e-22 107.1 73 65.8
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 6.4e-21 104.0 70 67.1
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.9e-20 102.4 59 74.6
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 7.8e-19 97.1 67 67.2
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.7e-18 95.9 56 73.2
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.3e-17 91.3 73 61.6
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 6.2e-16 87.4 62 64.5
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.0e-14 82.4 68 57.4
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.4e-12 76.3 73 56.2
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 4.6e-11 71.2 64 54.7


User provided reference genes

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