Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 3.1e-173 611.7 307 100.0
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 2.5e-114 416.0 292 72.6
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 1.6e-113 413.3 293 70.6
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 6.8e-112 407.9 239 81.6
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 8.9e-112 407.5 274 73.0
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 2.0e-111 406.4 284 71.1
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 2.9e-110 402.5 276 71.7
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 2.4e-109 399.4 277 71.8
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 3.2e-109 399.1 272 71.3
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 3.2e-109 399.1 287 70.4
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 7.1e-109 397.9 223 83.9
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 7.1e-109 397.9 285 68.8
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 1.6e-108 396.7 285 69.8
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 2.1e-108 396.4 289 67.8
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 3.5e-108 395.6 289 68.2
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 1.0e-107 394.0 236 79.2
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 1.3e-107 393.7 273 71.8
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 1.7e-107 393.3 238 79.8
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 1.7e-107 393.3 279 70.6
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 2.3e-107 392.9 313 66.5
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 2.3e-107 392.9 282 69.1
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 3.0e-107 392.5 279 69.5
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 3.0e-107 392.5 299 66.2
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 3.0e-107 392.5 289 66.8
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 6.6e-107 391.3 298 68.5
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 6.6e-107 391.3 274 70.1
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 1.1e-106 390.6 279 70.6
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 1.5e-106 390.2 236 78.0
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 1.5e-106 390.2 299 65.2
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 1.5e-106 390.2 270 69.6
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 3.3e-106 389.0 303 64.0
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 4.3e-106 388.7 273 69.6
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 4.3e-106 388.7 272 72.1
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 5.6e-106 388.3 300 65.7
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 5.6e-106 388.3 280 70.0
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 5.6e-106 388.3 298 64.8
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 5.6e-106 388.3 272 69.1
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 5.6e-106 388.3 279 69.2
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 9.6e-106 387.5 303 66.0
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 9.6e-106 387.5 274 69.0
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 1.2e-105 387.1 271 70.8
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 1.6e-105 386.7 304 63.5
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 1.6e-105 386.7 281 68.3
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 2.1e-105 386.3 297 65.0
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 2.1e-105 386.3 238 76.1
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 2.1e-105 386.3 289 67.8
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 2.1e-105 386.3 289 67.8
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 2.1e-105 386.3 304 63.2
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 2.8e-105 386.0 234 79.5
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 2.8e-105 386.0 300 65.0
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 3.6e-105 385.6 289 67.8
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 4.7e-105 385.2 240 76.2
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 1.1e-104 384.0 291 67.4
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 2.4e-104 382.9 245 74.3
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 2.4e-104 382.9 288 65.3
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 2.4e-104 382.9 230 79.1
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 3.1e-104 382.5 236 77.5
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 4.0e-104 382.1 267 69.7
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 5.2e-104 381.7 303 63.7
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 5.2e-104 381.7 234 77.8
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 5.2e-104 381.7 234 77.8
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 5.2e-104 381.7 288 65.6
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 1.2e-103 380.6 260 72.3
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 1.2e-103 380.6 273 68.5
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 1.2e-103 380.6 272 68.8
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 1.5e-103 380.2 299 65.9
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 1.5e-103 380.2 299 65.9
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 1.5e-103 380.2 299 65.9
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 1.5e-103 380.2 304 64.5
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.0e-103 379.8 301 65.4
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.0e-103 379.8 301 65.4
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 2.0e-103 379.8 272 69.1
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 2.6e-103 379.4 228 78.5
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 4.4e-103 378.6 274 68.6
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 9.9e-103 377.5 274 68.6
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 1.7e-102 376.7 260 71.9
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 4.9e-102 375.2 291 63.6
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 6.4e-102 374.8 310 62.9
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 9.3e-101 370.9 332 59.0
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 1.0e-99 367.5 307 61.6
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 1.3e-99 367.1 238 72.7
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 6.6e-99 364.8 293 65.9
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 4.3e-98 362.1 238 72.7
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 4.0e-96 355.5 268 66.8
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 4.0e-96 355.5 237 71.3
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 3.4e-95 352.4 245 69.0
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 1.9e-93 346.7 244 72.5
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 1.2e-92 344.0 294 62.9
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 1.6e-92 343.6 258 68.2
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 3.6e-89 332.4 257 66.5
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 3.4e-87 325.9 250 65.2
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 7.6e-87 324.7 251 65.3
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 2.9e-86 322.8 238 65.5
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 5.6e-82 308.5 245 63.7
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 1.7e-78 297.0 263 58.6
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.6e-76 290.4 223 65.5
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 2.3e-75 286.6 209 68.9
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 8.7e-75 284.6 193 72.0
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 2.8e-73 279.6 221 65.6
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 2.9e-70 269.6 182 70.9
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 1.3e-57 227.6 285 47.0
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 2.6e-55 219.9 198 59.1
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 8.5e-54 214.9 233 50.6
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 9.4e-53 211.5 177 62.7
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.7e-46 190.7 120 78.3
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 2.2e-46 190.3 113 77.9
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 1.5e-45 187.6 115 74.8
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 3.8e-38 162.9 105 70.5
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 3.8e-38 162.9 232 40.9
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 3.0e-27 126.7 75 76.0
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 1.3e-25 121.3 221 34.8
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 1.2e-23 114.8 210 37.1
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 7.5e-18 95.5 235 31.9
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 7.8e-15 85.5 64 65.6
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 1.9e-08 64.3 45 66.7
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 3.5e-07 60.1 33 72.7
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 6.0e-07 59.3 188 30.9
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.9e-06 56.6 181 30.4
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 8.6e-06 55.5 185 29.7


User provided reference genes

Program Settings