Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 1.8e-299 1031.9 566 100.0
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 1.2e-186 657.1 623 64.7
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.9e-176 623.2 627 60.9
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 4.3e-176 622.1 587 63.0
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 5.6e-136 488.8 670 49.1
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 8.1e-119 431.8 641 43.7
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 1.4e-118 431.0 650 43.5
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 1.7e-116 424.1 662 42.1
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 6.0e-114 415.6 644 42.2
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 1.0e-113 414.8 645 42.6
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.8e-113 414.1 650 42.8
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.1e-113 412.5 650 42.6
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.1e-111 407.1 658 41.9
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 3.1e-110 403.3 653 42.9
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 6.9e-110 402.1 653 42.7
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 9.0e-110 401.7 646 42.3
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 1.5e-109 401.0 653 42.6
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.0e-109 400.6 647 41.1
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 2.0e-109 400.6 655 41.4
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.3e-108 397.9 646 41.3
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 1.9e-107 394.0 671 40.7
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.2e-107 393.3 671 41.1
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 4.6e-106 389.4 641 41.2
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 3.0e-105 386.7 647 42.3
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.1e-104 384.8 654 40.2
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 1.6e-103 380.9 612 41.5
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 6.3e-103 379.0 632 41.0
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 1.8e-102 377.5 673 38.9
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 4.1e-102 376.3 649 40.2
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 4.1e-102 376.3 623 41.9
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 6.9e-102 375.6 649 39.9
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 2.0e-101 374.0 659 39.6
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 2.6e-101 373.6 648 41.7
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.3e-100 371.3 634 41.6
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 1.3e-100 371.3 647 40.5
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 3.8e-100 369.8 631 40.7
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 5.0e-100 369.4 653 39.7
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 1.4e-99 367.9 640 39.1
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 2.5e-99 367.1 641 40.1
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 2.5e-99 367.1 629 41.5
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 3.2e-99 366.7 634 38.6
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 4.2e-99 366.3 639 40.4
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 5.5e-99 365.9 647 39.1
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 7.2e-99 365.5 649 39.3
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 2.1e-98 364.0 638 39.5
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 2.1e-98 364.0 651 39.3
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 4.6e-98 362.8 626 40.3
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 6.1e-98 362.5 621 39.8
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 1.0e-97 361.7 649 39.8
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 2.0e-96 357.5 643 40.0
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 7.4e-96 355.5 657 38.1
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 1.3e-95 354.8 650 38.8
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.2e-95 354.0 636 38.5
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.8e-95 352.8 673 38.2
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 1.4e-94 351.3 633 39.5
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.4e-94 351.3 683 37.9
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.8e-94 350.9 632 40.0
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 6.9e-94 349.0 639 39.4
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 2.2e-92 344.0 615 40.2
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 2.9e-92 343.6 656 37.3
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 1.4e-91 341.3 640 38.8
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.4e-91 341.3 710 36.1
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 2.5e-91 340.5 641 38.5
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 7.2e-91 339.0 637 38.1
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 1.2e-90 338.2 745 35.3
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 1.4e-89 334.7 651 37.6
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 1.8e-89 334.3 639 37.2
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 5.2e-89 332.8 668 37.4
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 1.1e-88 331.6 640 38.0
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 4.4e-88 329.7 621 39.3
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 5.7e-88 329.3 646 36.5
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 1.4e-86 324.7 668 35.2
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 2.4e-86 323.9 523 40.7
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 4.5e-85 319.7 588 44.2
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 1.0e-84 318.5 667 34.9
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 2.2e-84 317.4 682 35.0
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 3.8e-84 316.6 681 36.4
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 8.5e-84 315.5 667 36.0
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.1e-83 315.1 605 38.7
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.9e-83 314.3 631 36.8
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 7.2e-83 312.4 692 35.0
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 1.2e-82 311.6 667 35.1
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 2.3e-81 307.4 523 40.5
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 3.0e-81 307.0 792 32.2
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 5.7e-80 302.8 692 34.7
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 5.7e-80 302.8 641 35.3
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 4.8e-79 299.7 648 36.6
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 9.1e-78 295.4 596 37.6
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.5e-72 278.1 648 34.0
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 7.5e-72 275.8 449 40.5
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 9.8e-72 275.4 626 34.0
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 4.8e-71 273.1 588 34.5
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 3.1e-70 270.4 449 41.2
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 2.2e-68 264.2 636 34.0
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 1.1e-67 261.9 470 37.4
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.8e-66 257.3 418 40.4
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 7.0e-62 242.7 440 40.0
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 5.0e-60 236.5 420 39.5
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 1.0e-57 228.8 519 35.8
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 3.5e-53 213.8 515 34.0
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 8.6e-52 209.1 421 36.8
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.2e-50 205.3 409 38.1
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.3e-43 180.6 184 53.3
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.2e-42 178.7 150 63.3
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 4.0e-41 173.7 350 40.3
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 4.9e-39 166.8 167 52.7
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 3.2e-38 164.1 165 52.1
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 4.1e-38 163.7 513 30.0
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 9.2e-38 162.5 184 48.9
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 4.6e-37 160.2 265 43.0
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 4.4e-32 143.7 297 37.7
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.5e-27 127.9 809 24.1
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 4.9e-23 113.6 742 23.9
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 3.0e-20 104.4 103 51.5
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 5.1e-20 103.6 173 40.5
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 8.7e-20 102.8 273 29.7
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 4.0e-17 94.0 175 34.3
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 1.5e-16 92.0 77 57.1
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 4.9e-15 87.0 184 34.8
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.5e-13 80.9 106 46.2
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.1e-12 77.0 103 43.7
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.5e-11 75.5 90 51.1
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.6e-10 72.0 98 49.0
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.4e-09 68.9 101 43.6
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 6.4e-07 60.1 52 51.9
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 2.4e-06 58.2 97 37.1


User provided reference genes

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