Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 0.0e+00 1541.6 821 100.0
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.1e-151 541.6 895 46.3
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.6e-144 517.7 868 45.9
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.4e-140 504.6 817 46.3
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 2.3e-114 417.5 937 38.6
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.3e-93 348.6 949 36.8
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 2.9e-77 294.3 858 35.5
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 2.1e-75 288.1 873 34.7
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.5e-68 265.4 896 33.0
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 7.3e-68 263.1 896 32.9
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 5.8e-65 253.4 862 33.4
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 1.7e-64 251.9 885 31.6
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.6e-62 245.4 884 30.8
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 6.6e-61 240.0 854 33.0
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.3e-58 231.5 883 31.4
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 7.5e-57 226.5 975 30.8
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.4e-55 222.2 882 30.5
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.7e-53 215.3 918 30.9
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 5.1e-53 213.8 903 30.8
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 5.1e-53 213.8 892 32.3
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.9e-52 211.8 919 29.8
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 4.3e-52 210.7 895 29.8
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 2.8e-51 208.0 918 29.6
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 6.2e-51 206.8 885 31.0
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 4.0e-50 204.1 919 29.5
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.5e-49 202.2 833 30.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.5e-49 202.2 905 29.3
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 9.9e-49 199.5 874 30.0
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.3e-48 199.1 882 30.5
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.7e-48 198.7 879 30.6
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 2.9e-48 198.0 858 29.7
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 7.1e-47 193.4 841 30.7
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.2e-46 192.6 924 29.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-45 189.5 892 28.7
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 2.3e-45 188.3 870 31.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 3.0e-45 188.0 861 30.4
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 8.6e-45 186.4 1008 27.8
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 8.6e-45 186.4 870 29.7
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 3.3e-44 184.5 869 29.9
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.3e-44 184.1 865 29.5
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.6e-44 183.7 897 29.2
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 2.1e-43 181.8 938 27.7
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.1e-42 179.5 864 29.5
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 6.9e-42 176.8 872 29.2
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 2.6e-41 174.9 865 29.4
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 3.4e-41 174.5 890 29.9
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.4e-41 174.1 898 28.1
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.2e-40 171.8 882 29.1
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 3.8e-40 171.0 947 28.3
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.4e-39 169.1 864 28.2
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.4e-39 168.3 893 28.7
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.4e-39 168.3 900 28.8
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 2.1e-38 165.2 909 29.4
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.7e-38 164.9 930 27.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.5e-38 164.5 891 28.5
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 7.8e-38 163.3 894 28.6
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.3e-37 162.5 851 29.5
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 3.9e-37 161.0 848 28.1
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.3e-36 157.9 884 27.7
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 2.1e-35 155.2 913 26.4
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 4.8e-35 154.1 862 29.5
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.4e-34 151.8 924 27.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.2e-33 149.4 906 26.7
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.5e-33 149.1 910 27.1
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.0e-33 148.7 878 27.7
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 2.0e-33 148.7 878 27.3
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 2.6e-33 148.3 889 28.5
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 2.6e-33 148.3 873 28.6
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 3.4e-33 147.9 942 27.5
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 3.4e-33 147.9 892 27.4
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 9.9e-33 146.4 829 27.6
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.2e-32 145.2 515 29.5
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 8.4e-32 143.3 282 39.0
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 5.4e-31 140.6 919 26.4
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 7.1e-31 140.2 868 26.8
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.2e-30 139.4 856 27.6
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-30 139.0 930 28.4
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 2.7e-30 138.3 930 27.6
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 3.5e-30 137.9 818 27.0
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 3.5e-30 137.9 902 25.9
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 4.6e-30 137.5 826 26.8
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.1e-29 134.0 857 28.1
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 6.7e-29 133.7 857 28.1
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.3e-28 131.3 786 27.7
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 4.3e-28 131.0 832 27.5
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 7.4e-28 130.2 168 51.2
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.3e-27 129.4 832 26.4
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 6.2e-27 127.1 944 26.8
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 8.1e-27 126.7 889 27.1
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.0e-25 122.1 824 26.5
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.2e-24 118.6 832 26.1
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.1e-23 116.3 978 26.5
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 5.5e-23 114.0 839 26.8
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 7.1e-23 113.6 388 33.5
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 9.3e-23 113.2 839 26.8
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.8e-21 109.0 911 25.4
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.3e-19 102.8 493 27.2
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.1e-18 99.8 889 24.5
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.4e-18 99.4 845 25.9
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 5.3e-18 97.4 810 26.7
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 5.3e-18 97.4 811 26.3
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 9.0e-18 96.7 875 25.9
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 9.0e-18 96.7 265 36.2
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.5e-17 95.9 834 25.5
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 4.5e-17 94.4 239 33.9
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 4.5e-17 94.4 755 26.0
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.0e-16 93.2 884 24.8
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 1.3e-16 92.8 806 25.6
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 4.2e-15 87.8 843 23.1
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 5.5e-15 87.4 229 35.4
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 7.1e-15 87.0 753 26.2
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.6e-14 85.9 913 25.2
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.7e-14 85.1 851 25.4
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 7.9e-14 83.6 873 25.1
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.0e-13 83.2 927 23.0
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.0e-13 81.6 163 41.1
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 5.1e-13 80.9 246 33.3
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 1.1e-12 79.7 193 36.8
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.3e-12 78.2 933 24.9
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.7e-12 77.4 122 44.3
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 7.4e-12 77.0 840 25.0
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 1.3e-11 76.3 116 42.2
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 3.7e-11 74.7 237 34.6
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 6.3e-11 73.9 910 24.2
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 8.2e-11 73.6 110 44.5
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.4e-10 72.8 844 24.4
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.1e-10 71.6 857 24.6
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.1e-10 71.2 354 31.9
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.2e-09 69.7 183 41.0
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 1.2e-09 69.7 803 25.8
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.6e-09 68.6 880 24.9
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.3e-08 66.2 180 32.2
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.9e-07 62.4 225 28.9
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 4.2e-07 61.2 216 31.5
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 5.5e-07 60.8 79 58.2
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.2e-06 59.7 845 23.9
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 2.7e-06 58.5 204 29.9
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 3.6e-06 58.2 235 32.3
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 4.6e-06 57.8 239 28.5
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 6.1e-06 57.4 280 27.9


User provided reference genes

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