Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1925.6 1069 100.0
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1464.5 1120 75.1
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1449.1 1116 75.0
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1441.8 1116 74.8
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1392.1 1063 70.5
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1210.7 1120 60.8
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1200.3 1058 63.2
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1187.9 1145 59.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1187.2 1116 61.3
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1184.9 1120 61.0
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1177.9 1114 59.0
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1174.1 1061 62.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1162.1 1071 60.0
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1160.2 1145 58.3
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1158.7 1059 60.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1154.8 1109 58.5
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1152.5 1117 57.8
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1151.3 1140 58.2
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1150.6 1119 58.4
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1144.0 1057 59.3
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1142.5 1107 61.1
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1142.1 1184 58.2
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1141.7 1135 57.1
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1138.6 1068 60.1
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1136.7 1117 57.6
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1135.9 1094 60.6
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1135.2 1077 59.0
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1134.8 1078 60.9
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1132.9 1147 56.4
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1132.5 1060 59.3
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1130.5 1149 58.1
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1128.6 1127 59.5
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1127.5 1130 57.6
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1126.3 1119 56.7
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1124.8 1052 58.5
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1124.4 1013 59.7
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1122.5 1063 58.7
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1122.1 1121 56.6
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1119.4 1126 58.1
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1117.8 1121 56.5
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1116.7 1122 55.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1111.3 1042 59.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1110.9 1036 57.5
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1108.2 1125 56.4
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1107.0 1105 56.6
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1106.3 1144 57.5
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1104.0 1059 58.3
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1103.6 1122 55.6
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1100.5 1129 58.1
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1097.4 1072 59.3
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1096.6 1115 57.9
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1094.3 1128 57.5
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1088.2 1118 57.5
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1087.0 1055 57.1
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1085.9 912 67.4
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1083.6 1103 55.9
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1081.6 1079 60.0
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1081.2 1129 55.4
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1080.9 1082 55.9
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1079.7 1065 56.4
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1077.8 1040 57.5
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1077.8 1114 56.5
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1076.2 1037 58.0
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 8.8e-311 1070.5 1147 56.4
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 3.6e-309 1065.1 1094 55.7
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.6e-307 1058.9 1132 55.2
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.3e-306 1053.9 1097 56.1
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 1.2e-304 1050.0 1117 53.5
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 7.7e-304 1047.3 1107 56.2
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 1.7e-303 1046.2 1177 54.9
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 2.5e-302 1042.3 1127 54.6
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 3.3e-302 1042.0 1125 54.9
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 7.2e-302 1040.8 1102 54.5
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 1.2e-301 1040.0 1125 54.8
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 8.0e-301 1037.3 1049 58.6
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 6.8e-300 1034.2 1015 57.3
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 9.8e-299 1030.4 1093 53.5
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 1.8e-297 1026.2 1141 53.5
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 4.1e-297 1025.0 1132 54.7
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 5.4e-297 1024.6 1074 56.7
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 3.8e-295 1018.5 1030 57.2
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 8.6e-295 1017.3 1048 56.7
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 1.9e-294 1016.1 1039 56.8
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 3.3e-294 1015.4 1025 57.9
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 3.3e-294 1015.4 1025 57.9
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 1.0e-292 1010.4 1146 53.9
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 1.0e-292 1010.4 1080 56.7
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 3.4e-291 1005.4 1025 56.8
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 3.4e-291 1005.4 1148 52.4
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.9e-290 1002.3 1039 56.5
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 7.8e-288 994.2 1076 54.6
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.2e-280 970.3 1134 50.6
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 3.9e-279 965.3 1018 56.5
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 1.2e-277 960.3 1125 51.2
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.7e-274 949.9 746 66.8
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 1.4e-268 930.2 1089 49.6
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 2.8e-261 906.0 1140 49.3
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 2.0e-259 899.8 1064 49.4
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 3.0e-255 885.9 1061 50.0
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 5.6e-254 881.7 1106 47.7
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 6.2e-253 878.2 1066 47.9
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 2.5e-246 856.3 1169 45.3
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.2e-245 851.7 1080 47.4
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 2.4e-244 849.7 1098 47.3
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 4.2e-233 812.4 764 61.3
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 6.1e-224 781.9 1072 45.1
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 9.1e-220 768.1 1085 43.5
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 3.4e-219 766.1 698 59.6
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 3.3e-214 749.6 1084 43.0
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 4.6e-171 606.3 967 40.2
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 3.6e-160 570.1 435 65.5
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.3e-146 524.2 1102 36.9
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 2.7e-131 474.2 610 46.6
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 7.4e-121 439.5 792 41.3
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 7.6e-118 429.5 563 53.5
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 3.2e-116 424.1 1076 32.4
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.1e-115 419.9 1048 34.3
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.9e-113 414.8 1127 31.5
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 5.5e-108 396.7 1068 33.3
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 9.4e-92 342.8 1060 29.1
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 9.7e-89 332.8 1097 30.8
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 3.2e-84 317.8 334 58.4
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.1e-83 315.1 374 55.1
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 6.5e-77 293.5 265 58.5
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 5.2e-74 283.9 247 61.1
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 2.2e-72 278.5 991 27.1
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.0e-69 269.6 1137 27.4
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 3.5e-62 244.6 987 26.0
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.1e-60 239.6 498 33.9
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 5.6e-60 237.3 498 33.9
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 6.8e-42 177.2 158 58.2
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.6e-38 166.0 216 44.9
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.1e-36 159.8 471 29.1
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 3.0e-29 135.2 519 25.4
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 4.0e-26 124.8 91 67.0
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.4e-25 121.3 129 49.6
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.2e-22 113.2 374 26.2
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.3e-21 109.8 187 35.3
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.6e-19 101.7 122 45.9
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.5e-15 87.8 71 57.7
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.3e-13 82.4 112 49.1
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.3e-13 82.4 61 67.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-12 79.7 59 67.8
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-12 79.7 59 67.8
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.3e-11 76.6 132 38.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 8.1e-11 73.9 79 51.9
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 8.1e-11 73.9 82 41.5
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 4.0e-10 71.6 84 50.0
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.0e-09 69.3 36 88.9
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.0e-09 69.3 191 30.9


User provided reference genes

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