Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.2e-73 278.9 141 100.0
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.8e-63 243.8 141 82.3
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.9e-62 241.5 141 81.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 9.9e-58 226.9 180 65.6
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.9e-53 212.6 140 72.9
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.2e-49 199.1 170 61.8
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 3.8e-49 198.4 177 61.0
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.9e-49 198.0 129 76.7
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.2e-48 194.9 178 57.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 9.3e-48 193.7 169 59.8
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.2e-47 193.4 169 58.6
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.7e-47 192.2 180 58.3
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.7e-47 192.2 178 58.4
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.5e-47 191.8 169 58.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.9e-46 188.3 180 57.8
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.9e-46 188.3 180 57.8
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.9e-46 188.3 168 58.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 8.7e-46 187.2 189 53.4
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.9e-45 186.0 169 56.2
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-45 186.0 169 55.0
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.9e-45 186.0 179 54.2
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.9e-45 186.0 169 58.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 4.3e-45 184.9 169 56.2
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 5.6e-45 184.5 169 56.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.6e-45 184.5 169 56.2
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 5.6e-45 184.5 169 56.2
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.6e-45 184.5 180 55.6
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 9.6e-45 183.7 177 55.4
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 9.6e-45 183.7 177 55.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 9.6e-45 183.7 169 55.0
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 9.6e-45 183.7 177 54.2
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 9.6e-45 183.7 169 57.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-44 183.3 169 58.0
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-44 183.3 164 57.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-44 183.0 177 54.8
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.6e-44 183.0 169 55.6
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.6e-44 183.0 169 55.0
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.1e-44 182.6 177 54.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.1e-44 182.6 180 56.1
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.7e-44 181.8 169 56.8
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.8e-44 181.4 169 55.0
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 6.2e-44 181.0 170 57.1
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.2e-44 181.0 169 54.4
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 8.1e-44 180.6 173 55.5
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 8.1e-44 180.6 169 53.8
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-43 180.3 175 57.7
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.1e-43 180.3 177 53.7
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.1e-43 180.3 169 56.2
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.1e-43 180.3 169 56.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.1e-43 180.3 169 56.2
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.1e-43 180.3 169 56.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-43 179.9 169 55.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.8e-43 179.5 169 54.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.8e-43 179.5 169 55.0
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 2.4e-43 179.1 169 55.6
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.4e-43 179.1 175 53.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.0e-43 178.3 167 53.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 5.3e-43 177.9 173 52.6
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.9e-43 177.6 177 53.1
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 9.0e-43 177.2 163 54.6
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.0e-43 177.2 163 54.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 9.0e-43 177.2 177 49.2
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 9.0e-43 177.2 169 53.8
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.0e-42 176.0 156 60.3
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.0e-42 176.0 165 53.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.6e-42 175.6 177 53.1
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.6e-42 175.6 169 54.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.4e-42 175.3 171 55.6
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.4e-42 175.3 184 52.2
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.4e-42 175.3 169 53.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.8e-42 174.5 162 56.8
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 7.6e-42 174.1 169 55.0
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.0e-41 173.7 169 53.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.3e-41 173.3 177 52.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.3e-41 173.3 177 51.4
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.2e-41 172.6 178 53.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.9e-41 172.2 177 51.4
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.9e-41 172.2 168 54.2
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 4.9e-41 171.4 177 50.8
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 6.5e-41 171.0 174 54.0
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 6.5e-41 171.0 169 52.7
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 8.4e-41 170.6 169 51.5
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 8.4e-41 170.6 179 53.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.1e-40 170.2 172 51.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.4e-40 169.9 174 53.4
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-40 169.5 170 55.3
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 4.2e-40 168.3 177 49.7
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 4.2e-40 168.3 176 52.3
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.5e-40 167.9 166 51.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 7.1e-40 167.5 170 54.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 7.1e-40 167.5 177 49.2
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 7.1e-40 167.5 177 49.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 7.1e-40 167.5 166 52.4
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 7.1e-40 167.5 169 52.1
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 9.3e-40 167.2 167 53.3
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 9.3e-40 167.2 174 52.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.6e-39 166.4 163 54.6
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.6e-39 166.4 167 50.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.6e-39 166.4 166 54.8
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.1e-39 166.0 181 51.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.1e-39 166.0 168 50.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.7e-39 165.6 177 49.2
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.7e-39 165.6 177 48.6
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.7e-39 165.6 177 48.6
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.5e-39 165.2 166 53.0
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 4.6e-39 164.9 94 76.6
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 7.9e-39 164.1 172 52.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-38 163.3 166 53.0
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-38 162.5 172 50.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.3e-38 162.5 165 51.5
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 6.7e-38 161.0 162 53.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 6.7e-38 161.0 166 51.2
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 8.7e-38 160.6 171 50.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.1e-37 160.2 167 50.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-37 160.2 176 50.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.9e-37 159.5 176 49.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 9.6e-37 157.1 167 51.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.6e-36 156.4 94 72.3
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.6e-36 156.4 165 49.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.1e-36 156.0 166 50.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 8.2e-36 154.1 162 50.0
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-35 153.7 168 48.2
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-35 153.7 168 48.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.4e-35 153.3 168 48.8
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.8e-35 152.9 163 50.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.1e-35 152.1 164 50.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 6.9e-35 151.0 164 48.2
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.2e-34 150.2 162 49.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.2e-34 150.2 96 68.8
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.0e-34 149.4 169 49.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 4.5e-34 148.3 164 50.0
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 5.9e-34 147.9 167 45.5
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 7.6e-34 147.5 92 69.6
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.0e-33 147.1 180 50.0
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.7e-33 146.4 163 46.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.2e-33 146.0 162 48.1
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.9e-33 145.6 168 46.4
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.4e-32 143.3 143 53.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.2e-32 141.7 162 48.8
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.2e-32 141.7 136 60.3
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.5e-32 141.4 169 47.3
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.6e-31 138.3 159 45.3
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 6.1e-31 137.9 160 46.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.9e-31 137.5 97 67.0
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.1e-30 134.8 159 44.0
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.3e-29 131.7 168 45.8
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 6.3e-28 127.9 165 44.2
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 6.3e-28 127.9 142 51.4
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 8.2e-28 127.5 168 45.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.2e-28 127.5 168 45.2
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-27 126.7 168 44.6
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.8e-27 126.3 160 45.6
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 6.9e-27 124.4 160 41.9
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 2.6e-26 122.5 166 46.4
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.5e-26 121.7 135 51.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-25 120.6 182 41.2
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.9e-25 119.0 135 49.6
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.5e-25 117.5 156 41.0
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.9e-22 108.6 159 37.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.7e-22 107.8 176 35.8
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-21 106.3 74 68.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.1e-19 100.5 133 48.9
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.4e-19 100.1 139 43.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.1e-19 98.6 134 46.3
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 9.1e-19 97.4 142 36.6
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.2e-15 87.0 76 57.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.7e-15 85.9 131 44.3
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.7e-15 85.9 134 37.3
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-14 84.0 50 74.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.4e-14 83.6 50 78.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-12 77.0 149 29.5
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.7e-10 67.8 36 75.0
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-09 67.0 36 77.8
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.8e-06 56.6 99 38.4
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-06 54.7 39 61.5


User provided reference genes

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