Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 4.6e-104 381.3 207 100.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.2e-82 309.3 181 85.6
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 7.2e-81 304.3 181 84.5
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 4.7e-80 301.6 181 84.0
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 5.5e-73 278.1 211 67.8
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 9.7e-70 267.3 207 68.1
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.7e-69 265.4 180 74.4
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 6.3e-69 264.6 207 69.1
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.4e-68 263.5 171 78.4
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.8e-68 263.1 180 70.6
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.1e-68 261.9 183 71.6
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.0e-67 259.6 179 73.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.8e-66 255.4 196 67.3
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.0e-66 255.0 180 68.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 5.0e-66 255.0 206 66.0
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.2e-65 251.9 180 70.0
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.2e-65 251.9 181 68.5
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 4.2e-65 251.9 183 67.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 7.2e-65 251.1 183 70.5
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.6e-64 250.0 183 66.1
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.1e-64 249.6 183 65.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.1e-64 249.6 168 72.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.6e-64 248.8 181 68.5
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.6e-64 248.8 168 71.4
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 6.1e-64 248.1 207 65.2
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.0e-64 247.7 186 68.3
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.0e-63 247.3 195 65.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.0e-63 247.3 168 72.6
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.0e-63 247.3 181 65.2
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.4e-63 246.9 202 64.4
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.4e-63 246.9 190 65.3
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.4e-63 246.9 207 63.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.4e-63 246.9 203 62.6
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.8e-63 246.5 194 64.9
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.3e-63 246.1 202 64.4
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.0e-63 245.4 180 67.2
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 4.0e-63 245.4 181 66.3
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 5.2e-63 245.0 178 68.5
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 8.8e-63 244.2 176 67.6
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-62 243.8 165 69.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.2e-62 243.8 174 70.7
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.5e-62 243.4 161 73.9
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.5e-62 243.4 178 69.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 3.3e-62 242.3 181 66.3
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.3e-61 240.4 174 66.1
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.3e-61 240.4 168 71.4
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 4.8e-61 238.4 174 64.4
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.3e-61 238.0 178 65.2
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 8.2e-61 237.7 164 70.1
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.2e-61 237.7 171 67.8
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.1e-60 237.3 185 63.8
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.4e-60 236.9 182 63.7
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.4e-60 236.9 182 65.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.4e-60 236.9 177 67.2
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.8e-60 236.5 177 67.2
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.8e-60 236.5 174 67.2
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.4e-60 236.1 164 68.3
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.1e-60 235.7 178 63.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.1e-60 235.7 203 58.6
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.1e-60 235.3 161 70.2
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 5.3e-60 235.0 164 68.3
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.3e-60 235.0 158 71.5
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 7.0e-60 234.6 172 66.3
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.2e-59 233.8 185 62.7
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.2e-59 233.8 181 64.1
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.6e-59 233.4 178 62.4
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.6e-59 233.4 181 61.9
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 2.0e-59 233.0 176 67.6
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.5e-59 231.9 174 64.9
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 5.9e-59 231.5 178 61.2
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 5.9e-59 231.5 202 55.9
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.9e-59 231.5 215 59.1
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.7e-59 231.1 171 66.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 7.7e-59 231.1 179 63.7
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.3e-58 230.3 173 67.1
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.3e-58 230.3 177 64.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.7e-58 229.9 173 66.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.7e-58 229.9 173 66.5
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.0e-58 228.4 165 68.5
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.0e-58 228.4 165 68.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 5.0e-58 228.4 149 71.8
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 6.5e-58 228.0 165 68.5
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 6.5e-58 228.0 165 68.5
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.1e-57 227.3 185 61.1
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.5e-57 226.9 180 62.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.9e-57 226.5 180 63.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.5e-57 226.1 179 62.6
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.5e-57 226.1 185 61.1
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.2e-56 223.8 207 60.4
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.6e-56 223.4 176 63.1
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.6e-56 223.4 186 59.1
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.7e-56 222.6 202 56.4
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.7e-56 222.6 210 54.8
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 4.7e-56 221.9 208 58.2
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 4.7e-56 221.9 172 61.6
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 6.1e-56 221.5 149 69.8
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-55 220.3 231 55.4
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.8e-55 219.9 165 65.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.8e-55 219.9 174 61.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 5.2e-55 218.4 149 69.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 5.2e-55 218.4 168 63.1
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.2e-54 217.2 183 61.2
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.2e-54 217.2 180 60.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.6e-54 216.1 188 59.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.6e-54 216.1 185 62.2
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.4e-54 215.3 172 59.9
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.7e-54 214.9 188 58.5
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.8e-54 214.2 173 59.0
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.8e-54 214.2 206 54.9
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.7e-53 213.4 155 65.8
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.7e-53 213.4 155 65.8
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 6.3e-53 211.5 166 61.4
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.8e-52 209.9 157 65.0
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.1e-52 209.1 158 63.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 9.1e-52 207.6 167 64.7
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 9.1e-52 207.6 179 57.5
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.6e-51 206.8 185 59.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.0e-51 206.5 186 57.5
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.7e-51 206.1 216 50.0
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.8e-48 196.1 167 62.3
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.0e-47 192.2 142 64.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 7.5e-46 188.0 204 52.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 4.5e-43 178.7 184 51.6
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.0e-42 177.6 181 51.9
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.7e-42 176.8 162 53.7
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 5.0e-42 175.3 165 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 6.6e-42 174.9 160 58.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.6e-40 170.2 200 46.5
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.1e-40 169.9 141 61.7
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.0e-35 151.8 176 47.7
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.9e-34 149.1 176 46.0
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.6e-33 145.2 177 44.6
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.1e-31 139.4 125 57.6
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 8.9e-31 137.9 92 68.5
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.5e-30 137.1 95 68.4
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 7.5e-30 134.8 100 67.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.2e-29 133.3 83 71.1
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 4.9e-29 132.1 139 50.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-28 131.0 98 65.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.9e-28 130.2 95 66.3
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.0e-28 128.3 95 61.1
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.5e-27 125.9 100 60.0
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 5.6e-25 118.6 82 67.1
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.1e-24 116.7 85 70.6
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 6.2e-24 115.2 76 69.7
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.1e-17 94.4 82 61.0
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.5e-17 94.0 75 65.3
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.6e-16 89.4 135 40.7
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 3.2e-12 76.3 63 63.5
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 6.0e-11 72.0 76 48.7
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 7.8e-11 71.6 138 31.9
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.1e-10 68.9 49 73.5
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.1e-08 63.5 42 71.4
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.7e-08 62.4 90 44.4
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 4.0e-07 59.3 62 51.6
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 1.5e-06 57.4 60 55.0
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 2.6e-06 56.6 38 63.2
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 5.8e-06 55.5 46 69.6
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 9.9e-06 54.7 60 53.3


User provided reference genes

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