Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g023930 Amaranthus hybridus HOM05D001765 ORTHO05D003527 5.9e-77 290.8 149 100.0
EL10Ac9g22070 Beta vulgaris HOM05D001765 ORTHO05D003527 6.2e-26 121.3 73 80.8
AUR62027108 Chenopodium quinoa HOM05D001765 ORTHO05D003527 4.0e-25 118.6 74 79.7
AUR62012884 Chenopodium quinoa HOM05D001765 ORTHO05D003527 2.0e-24 116.3 74 77.0
Hund00380 Selenicereus undatus HOM05D001765 ORTHO05D003527 4.5e-16 88.6 70 60.0
Cpa.g.sc37.116 Carica papaya HOM05D001765 ORTHO05D003527 4.9e-15 85.1 74 56.8
QL93p2012_0004 Quercus lobata HOM05D001765 ORTHO05D003527 6.4e-15 84.7 75 58.7
QL02p026712 Quercus lobata HOM05D001765 ORTHO05D003527 8.4e-15 84.3 74 59.5
QL93p2012_0027 Quercus lobata HOM05D001765 ORTHO05D003527 8.4e-15 84.3 74 59.5
Thecc.03G214000 Theobroma cacao HOM05D001765 ORTHO05D003527 7.1e-14 81.3 76 60.5
TWI60G1724 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 7.1e-14 81.3 73 54.8
ClCG01G001250 Citrullus lanatus HOM05D001765 ORTHO05D003527 9.3e-14 80.9 73 53.4
FvH4_5g10193 Fragaria vesca HOM05D001765 ORTHO05D003527 9.3e-14 80.9 74 55.4
Duzib084G1229 Durio zibethinus HOM05D001765 ORTHO05D003527 1.2e-13 80.5 75 60.0
MELO3C005810.2 Cucumis melo HOM05D001765 ORTHO05D003527 2.7e-13 79.3 78 52.6
CsaV3_5G001370 Cucumis sativus L. HOM05D001765 ORTHO05D003527 2.7e-13 79.3 78 51.3
Eucgr.D02536 Eucalyptus grandis HOM05D001765 ORTHO05D003527 3.5e-13 79.0 74 54.1
Actinidia22239 Actinidia chinensis HOM05D001765 ORTHO05D003527 4.6e-13 78.6 72 59.7
SGA_v2.0_scaffold20G09260 Striga asiatica HOM05D001765 ORTHO05D003527 4.6e-13 78.6 73 56.2
Duzib068G1454 Durio zibethinus HOM05D001765 ORTHO05D003527 6.0e-13 78.2 75 58.7
GSVIVG01019710001 Vitis vinifera HOM05D001765 ORTHO05D003527 6.0e-13 78.2 72 59.7
RcHm_v2.0_Chr7g0188041 Rosa chinensis HOM05D001765 ORTHO05D003527 7.9e-13 77.8 74 54.1
Gohir.A12G243600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.0e-12 77.4 77 51.9
Nitab4.5_0006317g0030 Nicotiana tabacum HOM05D001765 ORTHO05D003527 1.0e-12 77.4 68 55.9
SalBow1G2231 Salvia bowleyana HOM05D001765 ORTHO05D003527 1.0e-12 77.4 75 57.3
FAN18G1217 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.3e-12 77.0 109 44.0
Aqoxy5G04386 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 1.8e-12 76.6 70 54.3
CSS0000240 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 1.8e-12 76.6 72 56.9
FAN04G1154 Fragaria x ananassa HOM05D000258 ORTHO05D000153 1.8e-12 76.6 65 56.9
Sed0026089 Sechium edule HOM05D001765 ORTHO05D003527 1.8e-12 76.6 73 49.3
Nitab4.5_0000450g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 2.3e-12 76.3 68 54.4
FAN13G1501 Fragaria x ananassa HOM05D000258 ORTHO05D000153 3.0e-12 75.9 72 54.2
Peaxi162Scf00779g00211 Petunia axillaris HOM05D001765 ORTHO05D003527 3.0e-12 75.9 80 53.8
Haze_03593 Corylus avellana HOM05D001765 ORTHO05D003527 3.9e-12 75.5 82 51.2
Hma1.2p1_0436F.1_g152890 Hydrangea macrophylla HOM05D001765 ORTHO05D003527 3.9e-12 75.5 73 52.1
vmacro11471 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 3.9e-12 75.5 72 56.9
Gohir.D12G244600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.1e-12 75.1 77 50.6
Gorai.008G262200 Gossypium raimondii HOM05D001765 ORTHO05D003527 5.1e-12 75.1 77 50.6
CiPaw.11G106600 Carya illinoinensis HOM05D001765 ORTHO05D003527 6.7e-12 74.7 65 56.9
Lj2A148G64 Lonicera japonica HOM05D001765 ORTHO05D003527 6.7e-12 74.7 76 53.9
Prupe.5G136900 Prunus persica HOM05D001765 ORTHO05D003527 6.7e-12 74.7 76 53.9
Sed0027749 Sechium edule HOM05D001765 ORTHO05D003527 6.7e-12 74.7 73 46.6
Dinv12396 Davidia involucrata HOM05D001765 ORTHO05D003527 8.7e-12 74.3 73 54.8
Nn1g00491 Nelumbo nucifera HOM05D001765 ORTHO05D003527 8.7e-12 74.3 77 54.5
TAR375G0793 Trochodendron aralioides HOM05D001765 ORTHO05D003527 8.7e-12 74.3 73 50.7
Migut.E00773 Erythranthe guttata HOM05D001765 ORTHO05D003527 1.1e-11 73.9 75 54.7
MSTRG.2000 Avicennia marina HOM05D001765 ORTHO05D003527 3.3e-11 72.4 68 51.5
Ciclev10022684m.g Citrus clementina HOM05D001765 ORTHO05D003527 3.3e-11 72.4 74 54.1
Manes.01G000550 Manihot esculenta HOM05D001765 ORTHO05D003527 3.3e-11 72.4 76 53.9
PGR031G0625 Punica granatum HOM05D001765 ORTHO05D003527 3.3e-11 72.4 74 51.4
Aa31LG4G4230 Aethionema arabicum HOM05D001765 ORTHO05D003527 4.3e-11 72.0 52 65.4
MD06G1126400 Malus domestica HOM05D001765 ORTHO05D003527 4.3e-11 72.0 76 53.9
Cc08_g05160 Coffea canephora HOM05D001765 ORTHO05D003527 5.6e-11 71.6 64 54.7
C06p48050 Brassica napus HOM05D001765 ORTHO05D003527 7.4e-11 71.2 72 50.0
BolC6t39840H Brassica oleracea HOM05D001765 ORTHO05D003527 7.4e-11 71.2 72 50.0
PSO063G6238 Papaver somniferum HOM05D001765 ORTHO05D003527 7.4e-11 71.2 79 48.1
Carub.0002s2071 Capsella rubella HOM05D001765 ORTHO05D003527 1.3e-10 70.5 65 52.3
COL.COLO4_10860 Corchorus olitorius HOM05D001765 ORTHO05D003527 1.6e-10 70.1 73 49.3
PSO782G3477 Papaver somniferum HOM05D001765 ORTHO05D003527 2.1e-10 69.7 74 45.9
THA.LOC104823621 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 2.1e-10 69.7 76 51.3
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.8e-10 69.3 67 55.2
AL2G33770 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 3.7e-10 68.9 52 61.5
AT1G73940 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 3.7e-10 68.9 39 74.4
CARHR067050 Cardamine hirsuta HOM05D001765 ORTHO05D003527 4.8e-10 68.6 47 63.8
unitig_52.g17201 Utricularia gibba HOM05D000742 ORTHO05D000924 6.2e-10 68.2 74 48.6
Thhalv10019277m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 1.1e-09 67.4 39 71.8
Sp5g29140 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.1e-09 67.4 68 50.0
A07p39780 Brassica napus HOM05D001765 ORTHO05D003527 1.4e-09 67.0 39 71.8
BraA07t31525Z Brassica rapa HOM05D001765 ORTHO05D003527 1.4e-09 67.0 39 71.8
Atru.chr9.1818 Acer truncatum HOM05D001765 ORTHO05D003527 2.4e-09 66.2 75 49.3
BcaB03g15737 Brassica carinata HOM05D001765 ORTHO05D003527 3.1e-09 65.9 73 45.2
ATR0579G141 Amborella trichopoda HOM05D001765 ORTHO05D003527 5.3e-09 65.1 39 71.8
C06p33710 Brassica napus HOM05D001765 ORTHO05D003527 1.2e-08 63.9 39 66.7
Sabra16G0306500 Salix brachista HOM05D001765 ORTHO05D003527 1.2e-08 63.9 71 49.3
Potri.001G453400 Populus trichocarpa HOM05D001765 ORTHO05D003527 1.5e-08 63.5 71 47.9
CANSAT21G2548 Cannabis sativa HOM05D001765 ORTHO05D003527 2.0e-08 63.2 74 43.2
HPP92_020738 Vanilla planifolia HOM05D001765 ORTHO05D003527 9.9e-08 60.8 79 44.3
SEGI_06712 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 1.7e-07 60.1 66 43.9
Os03g0852500 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 2.2e-07 59.7 60 51.7
BolC6t38486H Brassica oleracea HOM05D001765 ORTHO05D003527 4.9e-07 58.5 72 47.2
Oeu020469.1 Olea europaea HOM05D001765 ORTHO05D003527 8.4e-07 57.8 75 46.7
Zm00001eb210620 Zea mays HOM05D001765 ORTHO05D003527 1.9e-06 56.6 49 51.0
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.4e-06 56.2 45 60.0
CiPaw.08G138100 Carya illinoinensis HOM05D001765 ORTHO05D003527 7.1e-06 54.7 43 53.5
Migut.H02511 Erythranthe guttata HOM05D001765 ORTHO05D003527 9.3e-06 54.3 43 51.2


User provided reference genes

Program Settings