Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 5.3e-125 451.1 232 100.0
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.5e-103 379.8 229 83.8
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 9.1e-101 370.5 232 80.2
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 3.8e-99 365.2 212 86.8
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.9e-98 362.8 232 78.9
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.2e-98 360.9 218 82.6
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.1e-97 359.4 234 77.8
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 4.7e-97 358.2 232 78.0
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 4.0e-96 355.1 232 77.6
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.7e-95 351.3 230 76.5
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 2.2e-94 349.4 238 73.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.2e-94 349.4 230 76.1
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 3.7e-94 348.6 234 74.8
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.4e-93 345.9 232 73.7
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.2e-92 343.6 236 73.3
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.2e-92 343.6 232 73.7
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.2e-92 343.6 229 74.2
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.5e-92 342.0 236 72.9
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.5e-92 342.0 229 72.9
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 3.5e-92 342.0 229 73.4
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 3.5e-92 342.0 229 73.4
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 4.5e-92 341.7 232 75.9
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 5.9e-92 341.3 230 73.5
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 5.9e-92 341.3 229 72.9
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.0e-91 340.5 236 72.5
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-91 340.5 236 72.5
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.3e-91 340.1 232 74.6
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.3e-91 339.3 227 72.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.3e-91 339.3 224 73.7
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 2.9e-91 339.0 232 75.0
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 3.8e-91 338.6 220 77.3
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 3.8e-91 338.6 230 75.2
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 5.0e-91 338.2 227 72.7
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 5.0e-91 338.2 233 72.5
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 6.6e-91 337.8 229 74.2
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.1e-90 337.0 229 72.1
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.1e-90 337.0 232 72.4
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.1e-90 337.0 220 76.4
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.9e-90 336.3 232 71.1
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.9e-90 336.3 230 72.6
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.5e-90 335.9 229 71.2
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 2.5e-90 335.9 229 72.9
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.5e-90 335.9 226 74.8
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 3.3e-90 335.5 232 71.1
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 7.3e-90 334.3 230 74.3
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 9.5e-90 334.0 230 70.4
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 9.5e-90 334.0 226 72.6
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 9.5e-90 334.0 232 70.7
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 1.6e-89 333.2 226 72.6
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.1e-89 332.8 227 70.9
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.1e-89 332.8 226 71.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.1e-89 332.8 230 72.2
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.6e-89 332.0 232 71.6
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 3.6e-89 332.0 232 71.6
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 3.6e-89 332.0 232 69.8
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.7e-89 331.6 232 71.1
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 6.1e-89 331.3 229 70.3
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 8.0e-89 330.9 232 71.1
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 8.0e-89 330.9 223 72.6
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.0e-88 330.5 229 69.4
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-88 330.1 228 70.2
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.4e-88 330.1 232 70.3
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.8e-88 329.7 225 72.0
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.0e-88 328.9 227 70.5
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.0e-88 328.9 232 70.3
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.0e-88 328.6 232 69.8
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 5.2e-88 328.2 225 72.4
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 6.8e-88 327.8 227 69.6
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 6.8e-88 327.8 228 69.3
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 6.8e-88 327.8 229 71.2
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 6.8e-88 327.8 232 69.8
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 8.9e-88 327.4 230 73.5
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-87 326.6 228 68.9
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-87 326.6 228 69.3
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.5e-87 326.6 227 69.6
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.0e-87 326.2 232 69.0
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 2.6e-87 325.9 227 68.7
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 5.7e-87 324.7 234 70.9
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 5.7e-87 324.7 232 70.7
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 9.8e-87 323.9 227 71.4
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 9.8e-87 323.9 234 69.2
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 9.8e-87 323.9 226 70.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.3e-86 323.6 232 69.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 6.4e-86 321.2 227 70.5
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-85 320.5 227 68.3
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-85 320.1 227 68.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.4e-85 320.1 234 67.9
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.4e-85 320.1 229 68.1
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.4e-85 320.1 229 68.1
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.8e-85 319.7 232 68.5
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 5.4e-85 318.2 227 67.8
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 5.4e-85 318.2 230 67.4
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 7.0e-85 317.8 223 70.4
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 2.0e-84 316.2 225 72.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 2.7e-84 315.8 234 67.5
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.7e-84 315.8 232 67.7
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.7e-84 315.8 232 68.1
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.5e-84 315.5 215 73.0
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.6e-84 315.1 227 66.5
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 4.6e-84 315.1 232 67.7
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 5.9e-84 314.7 225 71.6
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.8e-84 314.3 236 67.8
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 7.8e-84 314.3 213 72.8
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.0e-83 313.9 230 67.0
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.0e-83 312.4 236 67.4
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 6.6e-83 311.2 229 68.6
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.5e-82 310.1 230 71.3
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.9e-82 309.7 204 75.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.3e-82 308.9 226 67.7
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.6e-81 306.6 224 69.2
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 4.7e-81 305.1 212 70.8
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-80 303.9 267 60.3
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.8e-80 303.1 209 71.8
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 2.3e-80 302.8 208 71.6
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 5.2e-80 301.6 230 64.3
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.5e-79 300.1 215 70.2
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.5e-79 300.1 215 70.2
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.6e-79 299.3 212 69.3
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.4e-79 298.9 209 70.3
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.7e-78 295.4 230 66.5
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.9e-77 293.1 216 67.1
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.2e-77 292.4 210 70.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 4.1e-77 292.0 210 69.5
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 2.7e-76 289.3 247 59.5
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.0e-75 287.3 214 65.4
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 3.0e-75 285.8 225 62.2
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 6.6e-75 284.6 217 65.4
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 8.6e-75 284.3 214 65.9
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.1e-74 283.9 208 65.9
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.4e-72 276.9 192 71.9
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 6.8e-72 274.6 231 60.6
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 6.8e-72 274.6 207 66.2
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.3e-70 270.4 232 61.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 2.7e-68 262.7 230 60.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.1e-66 257.3 230 58.3
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 6.2e-65 251.5 183 70.5
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 5.2e-64 248.4 230 57.0
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 9.9e-63 244.2 237 56.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.7e-62 243.4 217 59.0
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.2e-62 243.0 186 66.7
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.4e-61 239.6 166 72.9
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 7.8e-60 234.6 232 56.0
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.0e-59 234.2 165 71.5
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.0e-59 234.2 231 55.0
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.3e-59 233.8 217 57.1
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.3e-59 233.0 210 58.1
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 5.1e-59 231.9 224 56.2
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 4.3e-58 228.8 210 58.6
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 3.4e-55 219.2 149 71.8
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.9e-54 216.1 224 54.0
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 4.2e-53 212.2 224 52.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 4.6e-52 208.8 177 65.5
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.7e-51 206.8 226 53.1
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.3e-51 206.5 167 64.7
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.6e-49 200.3 215 50.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.8e-41 172.9 247 43.7
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 2.0e-39 166.8 209 53.1
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.4e-37 160.6 230 42.6
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 6.0e-36 155.2 119 65.5
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 6.0e-36 155.2 248 41.9
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 6.7e-35 151.8 105 67.6
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.6e-33 147.1 113 64.6
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.6e-31 139.8 223 40.8
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 5.8e-31 138.7 105 65.7
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.6e-28 129.0 121 58.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-27 127.9 114 58.8
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 8.2e-25 118.2 78 73.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.5e-23 114.0 165 42.4
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 3.9e-19 99.4 66 69.7
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 8.2e-17 91.7 70 67.1
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 5.0e-14 82.4 71 57.7
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.9e-13 80.5 207 30.4
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.0e-10 70.5 105 43.8
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.5e-07 60.8 40 57.5
Cre03.g204751 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D043992 5.9e-07 58.9 76 42.1
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 6.5e-06 55.5 70 41.4


User provided reference genes

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