Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 2.1e-236 822.0 422 100.0
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.6e-183 646.4 416 79.6
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.7e-182 642.9 414 80.0
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.9e-157 559.7 422 72.3
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 5.0e-129 465.3 419 58.5
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 5.0e-129 465.3 420 62.9
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 8.5e-129 464.5 364 64.8
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 5.1e-126 455.3 415 58.6
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.3e-125 452.6 414 57.5
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.7e-124 449.1 417 57.3
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.1e-123 447.6 413 57.6
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.1e-123 447.6 419 56.3
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 5.9e-122 441.8 414 55.3
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.3e-121 440.7 413 56.4
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.7e-121 440.3 417 56.6
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 3.8e-121 439.1 418 54.8
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 3.8e-121 439.1 410 55.9
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 5.0e-121 438.7 335 63.6
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 2.5e-120 436.4 420 55.0
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 3.2e-120 436.0 420 54.8
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.2e-119 434.1 417 55.2
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-119 433.7 418 54.1
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.1e-119 433.3 420 55.0
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 2.1e-119 433.3 413 56.9
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 7.9e-119 431.4 417 55.2
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 7.9e-119 431.4 418 56.5
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 6.7e-118 428.3 388 57.0
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 4.4e-117 425.6 416 54.6
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 3.7e-116 422.5 414 55.8
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 3.7e-116 422.5 444 51.6
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 4.8e-116 422.2 413 55.2
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.2e-114 417.5 337 62.6
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 1.5e-114 417.2 388 56.2
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.6e-114 416.4 396 55.3
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.7e-113 413.7 384 55.2
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.7e-113 413.7 396 54.8
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 2.2e-113 413.3 335 62.7
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 3.8e-113 412.5 416 53.8
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.2e-111 407.5 428 53.0
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 2.1e-111 406.8 418 52.9
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.4e-110 404.1 406 55.2
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 6.7e-110 401.7 415 53.3
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.1e-109 401.0 414 51.9
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 2.6e-109 399.8 362 56.1
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 3.3e-109 399.4 414 53.6
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 2.2e-108 396.7 416 52.4
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 2.8e-108 396.4 428 50.0
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.8e-107 393.7 414 51.9
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 2.4e-107 393.3 413 53.3
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 2.6e-106 389.8 462 48.7
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.5e-106 389.4 417 50.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 3.8e-105 386.0 471 48.4
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 5.0e-105 385.6 415 51.8
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 1.1e-104 384.4 412 51.0
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 2.5e-104 383.3 422 50.9
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 3.2e-104 382.9 323 60.1
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.2e-103 380.9 416 51.7
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 5.2e-102 375.6 312 59.3
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 3.3e-101 372.9 417 49.2
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 7.5e-101 371.7 416 50.2
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.7e-100 370.5 365 55.1
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 1.7e-100 370.5 337 55.2
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.7e-100 370.5 413 49.6
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 4.8e-100 369.0 414 49.5
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 4.8e-100 369.0 430 50.7
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.6e-98 364.0 353 54.1
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 3.5e-98 362.8 421 49.6
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 4.5e-98 362.5 426 49.8
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 1.0e-97 361.3 353 53.8
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 1.0e-97 361.3 413 51.1
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 2.2e-97 360.1 434 49.8
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 2.2e-97 360.1 425 48.9
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 2.5e-96 356.7 419 47.7
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 4.2e-96 355.9 373 52.3
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.7e-95 353.2 411 50.4
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 2.7e-95 353.2 410 49.5
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 1.0e-94 351.3 419 48.4
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 1.5e-93 347.4 443 47.0
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 3.1e-91 339.7 423 46.3
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 5.4e-91 339.0 421 46.1
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 7.0e-91 338.6 421 45.8
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 2.7e-90 336.7 421 45.6
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 3.5e-90 336.3 421 45.6
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.5e-90 336.3 337 55.2
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 2.9e-89 333.2 388 50.0
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 4.2e-88 329.3 337 52.5
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 9.5e-88 328.2 381 48.0
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 3.7e-84 316.2 250 60.8
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 5.4e-83 312.4 416 45.9
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 1.2e-82 311.2 412 46.4
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 7.8e-82 308.5 425 43.3
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 7.0e-75 285.4 427 41.9
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 5.0e-73 279.3 241 58.5
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.1e-70 271.6 334 45.5
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 4.0e-70 269.6 418 42.3
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 1.5e-69 267.7 312 45.8
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 5.4e-67 259.2 192 64.1
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.3e-64 249.6 185 62.2
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.7e-57 227.6 201 64.2
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-55 220.3 166 60.8
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 6.2e-55 219.2 386 37.3
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 6.4e-52 209.1 324 38.3
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 8.7e-49 198.7 318 37.7
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 7.3e-48 195.7 426 33.3
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 6.9e-38 162.5 174 51.7
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-34 151.4 132 58.3
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 2.7e-34 150.6 106 64.2
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.5e-34 150.2 112 60.7
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-33 148.3 141 51.8
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 8.7e-33 145.6 128 57.8
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-30 138.3 124 52.4
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 1.4e-27 128.3 212 40.1
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 2.1e-26 124.4 201 34.8
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 3.0e-25 120.6 161 45.3
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 5.6e-24 116.3 124 49.2
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 1.7e-20 104.8 219 32.4
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 1.6e-18 98.2 284 27.8
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.7e-17 92.4 67 58.2
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 9.7e-16 89.0 350 25.4
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 2.2e-15 87.8 58 63.8
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.7e-15 87.0 58 62.1
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 2.4e-14 84.3 82 48.8
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.1e-14 84.0 141 38.3
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 8.5e-12 75.9 94 46.8
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 4.2e-11 73.6 78 50.0
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 5.7e-08 63.2 59 52.5


User provided reference genes

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