Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 5.5e-173 610.9 317 100.0
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.8e-116 422.5 315 73.0
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 6.8e-107 391.3 361 63.7
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.0e-102 375.9 327 65.1
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 5.2e-99 365.2 327 63.9
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.3e-97 360.5 331 61.6
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 4.0e-83 312.4 320 52.5
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 7.6e-82 308.1 310 55.5
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.9e-81 306.2 326 55.5
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 8.4e-81 304.7 321 51.1
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.1e-80 304.3 313 50.2
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.4e-80 303.9 312 57.1
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 3.2e-80 302.8 314 56.4
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 4.2e-80 302.4 334 54.5
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 4.2e-80 302.4 313 50.5
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 5.5e-80 302.0 318 56.3
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 5.5e-80 302.0 316 53.8
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 7.1e-80 301.6 322 54.7
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 1.2e-79 300.8 318 55.0
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 3.5e-79 299.3 314 57.0
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 6.0e-79 298.5 333 48.9
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 1.0e-78 297.7 312 54.2
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.3e-78 296.6 313 55.6
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 5.1e-78 295.4 322 54.3
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 6.7e-78 295.0 315 51.7
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 6.7e-78 295.0 315 51.7
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 6.7e-78 295.0 311 53.7
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 2.5e-77 293.1 325 54.2
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 3.3e-77 292.7 321 55.1
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 3.3e-77 292.7 320 50.0
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 5.6e-77 292.0 314 55.1
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 2.1e-76 290.0 321 53.9
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 2.1e-76 290.0 316 53.5
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.8e-76 288.9 328 53.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 6.2e-76 288.5 321 53.9
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.4e-75 287.3 316 53.2
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.8e-75 287.0 325 52.9
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 5.3e-75 285.4 322 46.9
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 5.3e-75 285.4 312 48.4
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 6.9e-75 285.0 317 52.1
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 9.0e-75 284.6 316 53.8
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.5e-74 283.9 346 51.7
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.5e-74 283.9 316 53.8
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.5e-74 283.9 377 47.7
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.6e-74 283.1 311 53.1
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.0e-73 281.2 312 51.0
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 2.9e-73 279.6 348 49.7
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 3.8e-73 279.3 326 50.3
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.8e-73 279.3 341 50.1
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 3.8e-73 279.3 314 53.5
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 4.9e-73 278.9 317 52.4
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.1e-72 277.7 348 49.1
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.4e-72 277.3 327 45.9
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 2.5e-72 276.6 314 49.0
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 2.5e-72 276.6 334 50.3
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 3.2e-72 276.2 314 52.5
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.5e-72 275.4 353 47.0
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 5.5e-72 275.4 357 48.2
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.2e-71 274.2 313 47.9
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 1.6e-71 273.9 320 49.1
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 4.6e-71 272.3 314 53.2
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.6e-71 272.3 334 50.3
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 1.3e-70 270.8 317 50.5
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 3.0e-70 269.6 336 51.2
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.9e-70 269.2 314 54.1
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 8.7e-70 268.1 316 51.3
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 2.5e-69 266.5 309 51.8
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 3.3e-69 266.2 354 47.2
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 5.7e-69 265.4 314 49.0
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 7.4e-69 265.0 296 52.7
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 1.3e-68 264.2 324 46.6
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.6e-68 263.8 337 49.3
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 2.8e-68 263.1 327 46.5
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.4e-67 260.8 325 46.2
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.4e-67 260.0 314 44.3
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 4.1e-67 259.2 313 48.2
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 7.6e-66 255.0 323 47.4
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 1.3e-65 254.2 323 47.4
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 5.0e-65 252.3 322 47.5
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 8.5e-65 251.5 323 46.7
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 4.2e-64 249.2 339 46.0
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 9.3e-64 248.1 336 44.6
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.2e-63 247.7 336 44.6
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 1.2e-63 247.7 336 44.9
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.2e-63 247.7 336 44.6
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.2e-63 247.7 336 44.6
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.7e-63 246.5 314 44.3
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 4.6e-63 245.7 350 44.6
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 2.3e-62 243.4 336 44.9
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 3.9e-62 242.7 342 45.6
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 3.9e-62 242.7 338 44.7
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 3.9e-62 242.7 375 42.7
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.9e-61 240.4 333 46.2
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.5e-61 240.0 317 45.7
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 2.5e-61 240.0 329 43.5
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 2.5e-61 240.0 370 42.7
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.3e-61 239.6 311 42.4
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 5.7e-61 238.8 264 51.5
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.6e-60 237.3 304 47.4
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.2e-60 236.9 311 42.4
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.2e-58 231.1 311 41.5
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 5.5e-56 222.2 312 47.4
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.5e-53 214.2 311 39.9
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 7.4e-53 211.8 301 40.9
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.7e-49 200.7 312 40.4
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 8.5e-49 198.4 260 48.5
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 4.2e-48 196.1 198 56.6
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 5.5e-48 195.7 320 39.4
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.7e-47 193.4 312 40.4
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 1.5e-45 187.6 295 39.0
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.7e-45 185.7 326 40.2
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 9.1e-43 178.3 387 31.3
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.1e-39 167.2 231 39.8
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 3.6e-39 166.4 267 41.9
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 5.3e-35 152.5 133 56.4
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 3.2e-32 143.3 150 52.0
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 6.1e-31 139.0 153 45.1
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 6.1e-31 139.0 315 32.7
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.8e-30 137.5 128 53.1
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.0e-30 136.7 294 34.0
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 2.0e-29 134.0 298 35.6
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 9.5e-24 115.2 324 32.7
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.6e-23 113.2 294 28.9
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.8e-22 110.9 312 27.2
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.7e-20 104.4 221 41.2
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.3e-20 102.4 100 46.0
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 1.0e-17 95.1 145 37.2
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 2.2e-12 77.4 56 60.7
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 6.4e-12 75.9 150 34.7
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.5e-08 64.7 118 34.7
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 2.1e-07 60.8 116 34.5
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 6.2e-07 59.3 109 37.6
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 4.0e-06 56.6 114 36.8
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 4.0e-06 56.6 114 36.0
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 4.0e-06 56.6 113 37.2


User provided reference genes

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