Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 0.0e+00 1343.9 690 100.0
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 3.8e-171 605.9 713 52.0
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.8e-159 565.5 697 49.8
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.6e-153 546.2 695 48.5
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 5.7e-106 389.4 760 38.0
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.0e-67 260.8 728 30.6
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.0e-67 260.8 728 30.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.3e-65 255.4 758 32.5
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 8.3e-65 252.7 740 31.9
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.4e-64 251.1 731 31.7
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.1e-64 250.8 736 31.9
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 2.0e-63 248.1 908 28.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 5.0e-62 243.4 854 28.6
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 9.4e-61 239.2 713 30.3
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.6e-60 238.4 747 30.5
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.0e-59 235.7 735 30.5
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 3.0e-59 234.2 730 29.7
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 4.0e-59 233.8 763 29.2
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.0e-58 231.5 866 28.1
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 2.0e-58 231.5 755 28.7
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.0e-58 231.5 728 30.8
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.0e-58 231.5 740 30.3
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 2.6e-58 231.1 747 30.8
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 4.4e-58 230.3 735 30.5
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.1e-56 225.7 730 31.0
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 4.5e-55 220.3 749 29.9
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 1.3e-54 218.8 721 28.6
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.7e-54 218.4 721 30.9
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 2.9e-54 217.6 728 29.1
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 6.6e-54 216.5 725 29.9
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 1.6e-52 211.8 746 28.2
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 8.0e-52 209.5 915 28.0
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.0e-51 209.1 829 27.9
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.4e-51 208.8 713 29.5
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.8e-51 208.4 724 29.8
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 4.0e-51 207.2 747 27.0
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 6.8e-51 206.5 755 28.5
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 6.8e-51 206.5 651 31.6
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 6.8e-51 206.5 634 30.0
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 6.8e-51 206.5 765 27.2
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.2e-50 205.7 862 26.8
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.5e-50 205.3 725 29.0
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.6e-50 204.5 844 28.8
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.4e-50 203.8 741 29.0
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.7e-49 200.7 649 31.9
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 3.7e-49 200.7 750 29.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 6.4e-49 199.9 699 28.9
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.4e-48 198.7 855 27.1
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.4e-48 198.0 651 32.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.1e-48 197.2 768 29.0
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 4.6e-47 193.7 713 29.9
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 5.0e-46 190.3 729 28.1
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 6.6e-46 189.9 704 26.7
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 8.6e-46 189.5 787 25.5
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.1e-45 189.1 696 27.6
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 4.3e-45 187.2 741 28.5
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.2e-44 185.7 843 26.3
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 2.8e-44 184.5 693 29.3
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 4.7e-44 183.7 711 27.0
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 8.0e-44 183.0 810 27.9
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.8e-43 181.8 738 27.1
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 5.2e-43 180.3 651 29.3
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 7.5e-42 176.4 697 26.1
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 9.8e-42 176.0 678 28.5
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.3e-41 175.6 756 26.1
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 2.2e-41 174.9 761 27.2
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 2.2e-41 174.9 787 28.6
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 3.7e-41 174.1 723 28.4
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.7e-41 174.1 639 27.7
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 6.4e-41 173.3 730 27.9
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 7.0e-40 169.9 771 27.0
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 1.2e-39 169.1 379 32.7
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.2e-39 169.1 833 25.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.2e-39 169.1 665 28.4
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.2e-39 169.1 942 27.2
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 3.5e-39 167.5 710 25.4
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 3.5e-39 167.5 773 28.3
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 4.6e-39 167.2 680 29.0
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 7.8e-39 166.4 673 27.5
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.7e-38 165.2 732 27.0
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.3e-38 164.9 794 26.4
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 4.3e-37 160.6 670 26.7
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 5.6e-37 160.2 816 25.4
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 2.1e-36 158.3 691 26.3
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 8.1e-36 156.4 725 26.3
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.4e-35 155.6 746 26.3
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 2.3e-35 154.8 740 27.3
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.3e-35 154.8 339 35.1
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.1e-35 154.5 746 26.3
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 5.2e-35 153.7 742 27.1
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 4.4e-34 150.6 740 26.5
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 5.8e-34 150.2 967 24.7
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.3e-33 149.1 942 24.1
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.7e-33 147.5 698 26.2
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.9e-32 145.2 563 28.8
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 2.7e-31 141.4 727 27.1
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 3.5e-31 141.0 945 24.0
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.5e-31 141.0 774 27.5
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.6e-31 140.6 799 26.3
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.7e-30 138.7 424 30.4
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.0e-30 137.9 926 22.7
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.5e-29 135.6 385 31.2
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 1.6e-28 132.1 764 26.4
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 4.7e-28 130.6 730 27.1
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 1.4e-27 129.0 743 26.6
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 2.3e-27 128.3 750 27.2
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 3.1e-27 127.9 712 23.9
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 4.0e-27 127.5 811 24.3
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.2e-26 125.9 760 25.9
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.0e-26 125.2 630 25.1
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 2.6e-26 124.8 730 26.4
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.9e-26 122.9 606 26.7
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 2.9e-25 121.3 739 26.5
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 1.1e-24 119.4 553 25.7
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 9.2e-24 116.3 680 26.3
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 6.0e-23 113.6 542 25.6
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 1.0e-22 112.8 624 27.2
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.9e-22 110.9 198 38.9
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 6.6e-22 110.2 650 25.2
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 7.3e-21 106.7 446 27.1
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 9.6e-21 106.3 760 24.5
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.1e-19 102.8 117 48.7
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.4e-19 102.4 75 65.3
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.8e-19 102.1 121 50.4
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 5.8e-18 97.1 539 27.1
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 1.9e-16 92.0 732 23.5
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 3.5e-15 87.8 408 26.0
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 1.0e-14 86.3 103 45.6
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.3e-14 85.1 89 51.7
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 3.9e-14 84.3 209 34.0
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 5.1e-14 84.0 122 44.3
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 5.1e-14 84.0 359 27.9
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 1.9e-13 82.0 647 24.0
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 8.1e-12 76.6 365 27.4
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.1e-11 76.3 81 43.2
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 6.9e-11 73.6 122 36.1
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 2.6e-10 71.6 126 35.7
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 2.9e-09 68.2 86 40.7
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.9e-08 65.5 98 41.8


User provided reference genes

Program Settings