Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.9e-257 891.0 451 100.0
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 8.2e-223 776.9 449 86.0
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.0e-220 770.0 445 87.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 6.1e-218 760.8 452 85.8
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 7.3e-187 657.5 453 75.1
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.1e-181 639.4 453 73.3
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.7e-180 636.3 435 73.8
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 5.6e-179 631.3 452 72.8
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 7.3e-179 630.9 450 70.9
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 2.8e-178 629.0 448 70.1
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 3.6e-178 628.6 449 70.8
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 4.7e-178 628.2 454 71.6
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 8.1e-178 627.5 450 71.1
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.8e-177 626.3 451 70.7
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.5e-176 623.2 461 70.3
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 3.7e-175 618.6 450 70.4
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.7e-175 618.6 451 71.2
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 8.3e-175 617.5 449 69.9
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 9.2e-174 614.0 453 69.3
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.7e-173 612.5 446 70.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.0e-172 610.5 459 68.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.0e-172 610.5 484 66.7
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.3e-172 610.1 444 70.7
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.3e-172 610.1 451 69.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.9e-171 606.3 451 69.2
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.9e-171 606.3 451 69.0
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.3e-171 604.4 452 70.4
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 7.3e-171 604.4 451 70.3
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 9.5e-171 604.0 451 70.5
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 2.1e-170 602.8 448 69.6
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 8.1e-170 600.9 447 69.4
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.8e-169 599.7 451 70.1
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 3.1e-169 599.0 449 67.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 4.0e-169 598.6 448 68.5
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.0e-169 598.6 451 70.1
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.0e-168 596.3 454 68.1
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 3.4e-168 595.5 467 66.4
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.4e-168 595.5 454 68.1
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 3.4e-168 595.5 450 67.6
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.9e-168 594.0 454 68.1
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.3e-167 593.6 448 67.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 8.4e-167 590.9 454 67.8
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 8.4e-167 590.9 451 67.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.1e-166 590.5 454 67.6
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 2.4e-166 589.3 456 67.1
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.6e-165 586.6 457 66.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.7e-165 585.9 447 68.5
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.6e-165 585.1 450 67.1
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 6.0e-165 584.7 432 68.8
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 6.0e-165 584.7 465 67.7
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 7.8e-165 584.3 452 66.2
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.3e-164 583.6 451 66.3
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.3e-164 583.6 451 67.4
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.3e-164 582.8 459 68.0
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.3e-164 582.8 447 67.1
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 3.9e-164 582.0 471 66.0
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 5.1e-164 581.6 425 69.9
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.1e-164 581.6 530 58.9
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 8.7e-164 580.9 450 65.3
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.1e-163 580.5 449 67.5
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.5e-163 580.1 450 67.6
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.5e-163 579.3 446 68.4
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 5.6e-163 578.2 452 66.6
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 5.6e-163 578.2 444 66.9
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 7.3e-163 577.8 451 66.5
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.4e-161 573.5 450 66.0
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.4e-161 573.5 472 65.3
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.1e-161 572.4 450 65.8
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 5.2e-161 571.6 450 65.6
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 6.9e-161 571.2 450 65.6
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.5e-160 570.1 450 66.2
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 3.4e-160 568.9 450 65.8
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 4.4e-160 568.5 426 68.5
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.4e-160 568.5 448 65.8
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 7.6e-160 567.8 470 65.1
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 7.6e-160 567.8 448 65.8
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.7e-159 566.6 451 65.4
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.7e-159 566.6 451 67.8
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.7e-159 566.6 451 64.5
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 3.8e-159 565.5 447 63.3
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 6.4e-159 564.7 452 65.9
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.4e-159 564.7 444 66.2
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 6.4e-159 564.7 448 67.4
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 8.4e-159 564.3 449 64.8
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.4e-158 563.5 447 65.8
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.4e-158 563.5 449 64.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.9e-158 563.1 449 65.0
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.4e-158 562.8 453 65.6
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.2e-158 562.4 449 64.6
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 5.4e-158 561.6 451 65.2
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 9.3e-158 560.8 452 64.2
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.6e-157 560.1 453 66.2
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.1e-157 559.7 453 66.2
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.1e-157 559.7 453 66.2
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 3.5e-157 558.9 483 62.1
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.3e-156 557.0 449 64.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.7e-156 556.6 449 64.8
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.0e-156 555.8 452 65.3
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 8.7e-156 554.3 447 66.4
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.9e-155 553.1 451 64.5
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 2.5e-155 552.7 448 63.4
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 7.3e-155 551.2 453 64.9
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.1e-154 549.7 450 66.4
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 8.1e-154 547.7 453 64.9
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.4e-153 546.2 444 65.1
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 5.3e-153 545.0 455 64.8
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.0e-153 544.3 450 65.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 7.6e-152 541.2 448 64.7
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.8e-151 538.9 448 65.0
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 2.4e-150 536.2 446 65.0
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.2e-150 535.8 452 64.4
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.2e-150 535.8 421 65.1
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 5.4e-150 535.0 439 63.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 4.6e-149 531.9 446 64.1
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.5e-147 526.2 513 55.2
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.5e-147 526.2 419 65.9
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.1e-146 523.1 447 63.3
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.4e-142 509.6 421 65.6
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.9e-141 504.6 425 61.6
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.3e-140 503.8 436 61.9
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.0e-140 502.7 446 59.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.0e-140 502.7 431 63.8
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.5e-134 483.0 443 58.7
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 7.9e-133 478.0 450 58.0
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.7e-130 469.2 450 55.6
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.1e-129 465.7 413 60.8
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 3.2e-126 456.1 459 57.1
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.7e-122 443.7 287 78.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.7e-122 442.6 428 54.7
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-121 440.3 397 61.2
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 2.4e-121 439.9 510 51.4
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.7e-114 417.2 474 51.5
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 2.9e-111 406.4 453 51.7
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.0e-108 397.9 456 50.2
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.9e-108 396.0 318 66.4
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 8.8e-108 394.8 341 61.3
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 5.2e-100 369.0 454 50.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.2e-99 367.9 519 46.8
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.3e-99 366.3 249 74.7
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.7e-88 330.1 318 58.2
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 8.6e-87 325.1 323 57.9
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 4.3e-78 296.2 456 41.4
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 3.6e-77 293.1 193 76.2
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 2.0e-72 277.3 297 52.9
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.3e-70 269.6 283 53.7
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.6e-69 267.7 192 69.8
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.1e-68 265.0 192 68.8
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 9.8e-67 258.5 217 62.2
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 7.0e-65 252.3 239 59.0
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 4.0e-60 236.5 238 56.3
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.3e-58 231.5 158 74.7
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 3.4e-51 206.8 184 62.0
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 4.9e-50 203.0 257 47.5
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 7.1e-49 199.1 128 75.8
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.1e-48 197.6 170 57.6
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.6e-47 192.6 287 43.6
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-46 191.4 120 75.8
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.2e-42 177.6 212 47.6
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.8e-42 176.8 297 38.4
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 6.4e-42 176.0 317 37.5
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.9e-41 174.5 130 64.6
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 3.3e-38 163.7 293 36.5
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.6e-32 144.8 167 44.9
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.1e-28 132.1 154 48.7
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 6.9e-28 129.4 101 61.4
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 7.6e-27 125.9 79 83.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.4e-25 121.7 75 77.3
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 4.8e-21 106.7 73 76.7
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 2.6e-19 100.9 98 59.2
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.0e-15 89.0 153 38.6
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.3e-15 87.8 101 53.5
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 8.7e-15 85.9 49 87.8
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 2.2e-13 81.3 122 41.8
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.2e-11 75.5 46 84.8
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 4.5e-11 73.6 50 70.0
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 1.3e-10 72.0 51 68.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.8e-10 70.5 42 81.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 4.6e-08 63.5 59 59.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.0e-06 58.2 36 69.4
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 2.5e-06 57.8 148 32.4
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 3.3e-06 57.4 146 34.9
PSO384G3198 Papaver somniferum HOM05D002054 ORTHO05D005362 4.3e-06 57.0 162 28.4
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 7.4e-06 56.2 76 44.7
Actinidia31094 Actinidia chinensis HOM05D002054 ORTHO05D005362 9.7e-06 55.8 149 32.9


User provided reference genes

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