Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 2347.8 1182 100.0
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1820.8 1095 84.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1745.7 1109 82.1
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 948 88.2
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1685.6 1118 77.4
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1117 77.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1115 75.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1117 75.3
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1043 78.3
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1635.2 1116 75.2
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1122 74.9
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1036 78.6
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1628.6 1036 78.5
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1119 74.2
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1036 78.1
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1622.1 1116 74.5
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1621.3 1038 78.2
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1621.3 1036 78.2
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1621.3 1116 74.5
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1619.8 1114 74.3
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1120 73.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1614.4 1108 74.4
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1116 73.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1613.2 1036 77.0
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1612.0 1114 74.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1609.3 1096 74.2
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1609.0 1109 74.2
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1115 73.9
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1600.1 1151 71.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 1054 76.1
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1597.0 1057 76.1
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1593.6 1060 76.4
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1122 72.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1590.9 1113 73.5
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1589.7 1113 73.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1118 72.6
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1588.9 1116 73.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1586.6 1115 73.3
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1585.1 1043 76.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1159 70.2
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1582.0 1120 72.5
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1580.5 1120 72.8
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1579.3 1040 76.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1578.9 1087 73.5
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1578.5 1064 74.4
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1577.8 1052 75.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1577.8 1116 72.1
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1576.2 1105 72.0
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1576.2 1114 71.8
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1121 72.2
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1573.5 1058 75.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1573.5 1114 71.6
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1571.2 1208 68.1
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1570.4 1123 72.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1569.3 1052 75.6
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1568.9 1010 76.4
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1567.0 1114 72.1
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1563.5 1036 75.2
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1562.7 1032 75.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1562.7 1106 72.1
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1559.3 1091 72.4
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1558.1 1091 72.7
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1557.3 1126 71.0
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1553.9 1048 74.9
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1553.1 1085 72.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1552.3 1117 71.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1552.0 1110 71.8
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1550.8 1118 70.9
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1546.9 1066 73.2
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1546.2 1006 75.8
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1546.2 1048 74.1
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1540.4 1033 74.7
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1538.9 1111 71.3
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1538.5 1045 73.7
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1537.3 1006 75.5
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1536.5 1037 74.0
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1535.4 1036 73.8
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1535.4 1045 73.6
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1533.5 1048 73.1
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1533.1 1048 73.2
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1532.7 1048 73.1
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1531.9 1106 71.7
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1531.2 1033 73.9
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1530.8 1087 71.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1529.2 1030 73.9
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1529.2 1043 73.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1529.2 1140 69.5
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1111 70.4
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1526.9 1029 74.7
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1523.5 1116 70.3
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1521.1 1034 73.1
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1520.8 1027 73.3
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1520.8 1043 73.2
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1519.6 1034 72.9
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1517.3 1037 73.3
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1516.9 1033 73.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1516.9 1034 72.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1511.1 1033 73.1
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1510.7 1096 69.5
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1510.4 1034 72.7
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1508.0 1033 73.6
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1505.3 1203 66.0
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1502.6 1227 64.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1501.9 1200 66.3
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1490.7 1032 72.8
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1464.5 1115 68.5
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1436.0 1114 66.8
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1418.7 1046 69.2
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1400.2 940 73.9
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1397.9 1060 69.8
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1377.5 895 76.4
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1372.1 1044 66.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1366.7 1037 65.8
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1295.0 983 65.5
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1281.5 1066 64.0
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1281.2 1066 63.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1260.0 801 77.8
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1213.4 1021 60.3
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1166.8 866 69.2
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1136.3 1063 57.8
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1119.4 785 72.9
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1113.6 747 74.2
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.2e-310 1070.1 1074 52.9
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 5.4e-306 1054.7 716 73.0
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 1.2e-302 1043.5 997 52.1
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 8.3e-299 1030.8 1018 53.0
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.9e-279 966.5 738 66.4
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.4e-266 923.7 923 56.4
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 2.1e-265 919.8 903 55.4
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.4e-259 898.3 777 59.1
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 9.6e-255 884.4 606 72.4
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.2e-236 824.3 596 70.6
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.9e-227 793.1 1026 42.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.2e-206 723.8 671 56.3
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.5e-195 685.6 451 76.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.3e-187 660.6 642 55.6
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 4.2e-186 656.4 623 56.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.9e-170 604.4 531 60.3
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.4e-168 598.2 509 65.2
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.7e-166 591.3 415 70.8
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 6.4e-166 589.3 414 72.2
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.1e-157 560.1 347 81.8
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.1e-149 535.4 510 60.0
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.5e-146 525.0 431 62.4
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 3.9e-139 500.4 393 63.6
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.1e-125 455.7 337 69.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 9.3e-117 426.0 394 57.4
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.8e-110 404.1 343 60.6
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.1e-107 393.7 309 65.4
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 5.0e-102 377.1 956 29.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 6.1e-100 370.2 896 29.1
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.8e-99 368.6 270 70.4
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.0e-91 341.3 941 28.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.3e-86 325.9 875 30.2
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 6.5e-78 297.0 228 66.7
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.9e-73 280.8 179 76.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 4.6e-55 221.1 222 52.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-47 196.1 819 23.2
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 4.7e-44 184.5 332 33.4
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-42 179.5 311 38.9
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.7e-41 176.0 206 49.5
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 3.7e-41 174.9 220 50.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.7e-41 174.9 156 59.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.2e-39 169.9 125 65.6
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.1e-39 169.1 154 57.1
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.5e-37 162.9 125 68.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 8.1e-36 157.1 299 35.8
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.5e-34 152.9 488 27.3
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.1e-31 142.5 180 41.7
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.3e-30 139.0 124 61.3
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.2e-26 126.7 190 40.5
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.1e-24 120.2 460 26.5
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 4.6e-23 114.8 164 51.2
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 7.4e-21 107.5 75 68.0
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.9e-16 92.8 231 24.7
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 3.2e-16 92.0 56 78.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 5.3e-11 74.7 45 75.6
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 9.0e-11 73.9 149 39.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.6e-10 72.4 138 37.7
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.6e-10 72.4 48 70.8
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.5e-09 67.8 49 65.3
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.6e-07 61.6 36 77.8


User provided reference genes

Program Settings