Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.8e-142 509.2 248 100.0
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.6e-117 425.6 248 81.5
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.4e-110 403.3 248 77.8
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.5e-109 397.5 248 76.6
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 9.1e-107 390.6 248 74.2
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 5.7e-101 371.3 255 72.2
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.6e-95 352.1 251 69.3
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.6e-95 352.1 251 69.3
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.5e-85 320.1 259 63.7
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 4.6e-82 308.5 256 61.7
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.3e-81 307.0 218 67.0
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.3e-81 306.2 251 61.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.6e-81 304.7 246 60.2
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.6e-81 304.7 251 61.4
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 6.6e-81 304.7 237 63.7
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.5e-80 303.5 255 60.4
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.9e-80 303.1 255 59.6
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.9e-80 303.1 250 60.8
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 2.5e-80 302.8 250 60.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.3e-80 302.4 259 57.9
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.3e-80 302.4 252 60.3
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.2e-79 300.4 251 59.8
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 4.7e-79 298.5 264 58.0
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.7e-79 298.5 206 68.4
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 6.2e-79 298.1 249 59.4
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.1e-78 297.4 244 61.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.3e-78 296.2 209 68.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.0e-78 295.4 254 59.4
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 5.2e-78 295.0 232 62.5
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 6.8e-78 294.7 247 59.5
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.5e-77 293.5 218 66.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 1.5e-77 293.5 259 57.9
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 247 57.5
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 247 57.5
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.4e-77 292.4 216 64.4
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 5.8e-77 291.6 211 67.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-76 290.4 247 57.1
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.3e-76 290.4 240 60.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.7e-76 290.0 218 64.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.7e-76 290.0 208 67.8
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.7e-76 290.0 244 59.4
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 2.2e-76 289.7 256 58.6
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.7e-76 288.9 211 65.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 4.9e-76 288.5 234 62.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.4e-75 286.2 229 61.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 3.2e-75 285.8 172 73.3
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.1e-75 285.4 229 61.1
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.4e-75 285.0 251 56.6
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 5.4e-75 285.0 247 58.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 7.0e-75 284.6 206 66.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.2e-75 284.3 247 58.3
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 9.2e-75 284.3 241 58.1
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 9.2e-75 284.3 212 65.1
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 9.2e-75 284.3 204 66.7
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 9.2e-75 284.3 251 58.2
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.2e-74 283.9 217 65.0
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.2e-74 283.9 166 77.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 2.1e-74 283.1 199 67.8
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.7e-74 282.7 209 65.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.5e-74 282.3 249 59.4
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.0e-74 281.6 204 65.7
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 7.8e-74 281.2 226 60.2
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 7.8e-74 281.2 212 64.6
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.8e-74 281.2 212 64.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-73 280.8 230 61.3
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.7e-73 280.0 226 59.3
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.3e-73 279.6 247 57.5
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.3e-73 279.6 228 59.2
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 5.1e-73 278.5 174 73.0
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 5.1e-73 278.5 212 63.7
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 5.1e-73 278.5 212 63.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.6e-73 277.7 230 61.3
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 8.6e-73 277.7 248 57.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.1e-72 277.3 220 62.3
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-72 276.9 212 64.2
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.5e-72 276.2 173 70.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.3e-72 275.8 206 62.6
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 4.3e-72 275.4 256 54.7
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.3e-72 275.4 201 66.7
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.3e-72 274.6 217 63.1
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 9.5e-72 274.2 199 64.8
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.1e-71 273.1 164 75.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.8e-71 272.7 192 67.7
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 3.6e-71 272.3 173 72.8
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.6e-71 272.3 162 75.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 6.2e-71 271.6 204 64.2
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.1e-70 270.8 195 64.6
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.8e-70 270.0 225 58.7
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.1e-70 269.2 197 66.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 3.1e-70 269.2 209 63.6
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 4.0e-70 268.9 218 58.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 5.2e-70 268.5 254 55.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 8.9e-70 267.7 200 64.0
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 8.9e-70 267.7 213 61.5
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.5e-69 266.9 218 58.3
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.5e-69 266.9 204 63.2
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.5e-69 266.9 174 68.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.5e-69 266.9 227 56.8
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.0e-69 266.5 208 60.6
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 3.4e-69 265.8 230 54.8
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.2e-68 263.1 173 67.6
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 3.7e-68 262.3 251 55.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.7e-68 262.3 213 58.7
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-67 260.4 229 54.1
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.4e-67 259.6 208 59.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 4.1e-67 258.8 211 59.2
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 7.1e-67 258.1 246 52.8
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 3.5e-66 255.8 174 64.9
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.5e-66 255.8 174 64.9
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.5e-66 255.8 176 64.2
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 3.5e-66 255.8 213 57.7
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 4.6e-66 255.4 174 64.4
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 4.6e-66 255.4 174 64.4
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 4.6e-66 255.4 175 64.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 7.8e-66 254.6 175 64.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 3.0e-65 252.7 176 63.6
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.0e-65 252.7 210 56.7
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.7e-63 245.4 139 81.3
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 4.0e-62 242.3 192 57.3
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.8e-62 241.5 212 57.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.2e-61 240.7 194 63.9
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.4e-61 239.2 198 59.1
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 3.8e-60 235.7 219 55.3
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 6.4e-60 235.0 219 55.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.9e-59 233.4 144 72.9
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.2e-59 232.6 137 75.9
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 4.2e-59 232.3 168 65.5
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.3e-57 227.3 176 61.9
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.7e-57 226.9 198 54.5
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.1e-56 224.2 235 51.5
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 4.3e-56 222.2 205 55.1
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 5.6e-56 221.9 164 60.4
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.8e-55 219.5 163 60.7
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 3.6e-55 219.2 171 57.9
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 5.3e-54 215.3 173 57.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.2e-52 209.9 145 66.9
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.5e-50 202.6 173 57.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.3e-49 199.9 167 53.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.9e-49 199.1 144 66.0
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.9e-49 199.1 116 76.7
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 6.6e-49 198.4 237 48.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.7e-49 198.0 148 64.2
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.0e-46 189.1 247 45.3
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.4e-43 180.6 229 45.4
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.7e-41 171.4 137 59.9
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 6.0e-34 148.7 91 73.6
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.3e-32 142.9 93 72.0
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 4.8e-31 139.0 136 52.9
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 9.0e-30 134.8 84 72.6
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 4.9e-28 129.0 217 32.7
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.2e-27 125.9 216 39.4
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.3e-25 120.2 81 64.2
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 3.9e-25 119.4 77 76.6
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 9.7e-24 114.8 71 78.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.3e-23 114.4 137 42.3
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-23 113.6 71 73.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.7e-18 96.7 65 69.2
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.8e-15 85.9 68 52.9
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 5.5e-11 72.4 70 45.7
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.5e-11 72.4 46 65.2
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 5.5e-11 72.4 54 59.3
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.8e-09 67.4 47 61.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.1e-09 65.9 39 71.8
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.1e-09 65.9 46 60.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 8.2e-07 58.5 94 37.2
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.4e-06 57.0 43 58.1


User provided reference genes

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