Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.1e-125 451.8 229 100.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.1e-93 347.1 229 78.6
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.4e-93 345.9 241 76.3
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.8e-83 312.0 205 78.0
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.7e-70 270.0 238 62.6
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.8e-70 269.2 235 58.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.8e-69 266.5 207 63.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.1e-69 265.8 241 58.1
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.3e-69 265.0 203 64.5
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 9.1e-69 264.2 236 59.3
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 9.1e-69 264.2 236 59.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.2e-68 263.8 243 58.4
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.5e-68 262.3 233 56.7
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.5e-68 262.3 223 58.7
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 5.9e-68 261.5 201 63.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 5.9e-68 261.5 207 61.4
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 5.9e-68 261.5 240 56.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.0e-67 260.8 241 56.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.0e-67 260.8 235 56.2
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.8e-67 258.8 223 58.7
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.8e-67 258.8 238 58.0
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 5.0e-67 258.5 237 56.5
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 5.0e-67 258.5 243 54.3
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.1e-66 257.3 184 67.4
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-66 257.3 238 56.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.1e-66 257.3 233 58.4
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.5e-66 256.9 193 64.8
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.9e-66 256.5 241 56.4
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.9e-66 256.5 236 56.8
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.9e-66 256.5 204 62.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 4.2e-66 255.4 204 61.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 4.2e-66 255.4 205 59.5
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 7.2e-66 254.6 204 62.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 7.2e-66 254.6 205 62.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 7.2e-66 254.6 196 62.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 7.2e-66 254.6 207 60.4
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 7.2e-66 254.6 228 57.5
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 9.4e-66 254.2 207 60.4
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.6e-65 253.4 237 55.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.1e-65 253.1 234 56.0
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.7e-65 252.7 173 68.2
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.7e-65 252.7 203 62.1
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.7e-65 252.7 203 62.1
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.7e-65 252.7 237 55.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 4.7e-65 251.9 193 63.2
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.7e-65 251.9 199 61.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 6.1e-65 251.5 204 60.3
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.1e-65 251.5 230 57.8
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 8.0e-65 251.1 201 61.2
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 8.0e-65 251.1 201 61.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.0e-65 251.1 225 56.9
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.0e-64 250.8 205 61.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-64 250.8 205 61.5
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 236 54.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.8e-64 250.0 224 56.2
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.8e-64 250.0 239 53.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 2.3e-64 249.6 193 62.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.3e-64 249.6 194 59.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 3.0e-64 249.2 238 55.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.0e-64 249.2 237 54.9
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 5.2e-64 248.4 225 55.1
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 5.2e-64 248.4 236 57.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 5.2e-64 248.4 228 55.7
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 6.8e-64 248.1 224 55.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 8.8e-64 247.7 173 65.9
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 8.8e-64 247.7 237 55.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.8e-64 247.7 240 53.8
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.2e-63 247.3 193 60.6
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.5e-63 246.9 203 60.1
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.5e-63 246.9 207 58.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.5e-63 246.9 229 55.9
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-63 246.5 236 54.2
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.6e-63 246.1 212 57.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.4e-63 245.7 202 59.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.4e-63 245.7 202 59.9
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.4e-63 245.7 178 65.2
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.4e-63 245.7 231 53.7
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.4e-63 245.4 223 57.8
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 4.4e-63 245.4 178 65.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.4e-63 245.4 236 54.2
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.4e-63 245.4 237 54.4
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 5.7e-63 245.0 234 54.3
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 5.7e-63 245.0 235 53.6
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 7.5e-63 244.6 239 54.8
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 7.5e-63 244.6 225 58.2
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.7e-62 243.4 205 57.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 4.8e-62 241.9 239 52.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 6.3e-62 241.5 178 64.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 8.3e-62 241.1 218 56.9
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.3e-62 241.1 234 54.3
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.1e-61 240.7 229 55.5
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-61 240.4 175 65.1
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.4e-61 240.4 237 54.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.8e-61 240.0 239 54.4
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.4e-61 239.6 230 54.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 7.0e-61 238.0 233 55.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.1e-61 237.7 242 53.3
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.2e-60 237.3 231 53.7
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.2e-60 237.3 242 52.9
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-60 237.3 189 59.3
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.6e-60 236.9 194 58.2
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 2.0e-60 236.5 204 56.9
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 4.5e-60 235.3 239 51.0
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 5.9e-60 235.0 241 52.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.0e-59 234.2 192 57.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.0e-59 234.2 207 57.0
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.3e-59 233.8 235 52.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 2.2e-59 233.0 173 64.7
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.9e-58 229.9 209 58.9
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.5e-58 229.6 173 63.6
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.2e-58 229.2 170 64.1
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.5e-58 228.4 170 62.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.2e-58 228.0 161 66.5
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 9.4e-58 227.6 187 58.8
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.2e-57 227.3 235 51.5
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.6e-57 226.9 205 55.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.6e-57 226.9 218 53.7
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.7e-57 226.1 153 71.2
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 8.0e-57 224.6 170 62.9
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 8.0e-57 224.6 232 51.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.0e-56 224.2 239 53.1
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.8e-56 223.4 209 57.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.3e-56 223.0 215 53.5
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.2e-56 221.9 182 59.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.8e-56 221.5 184 59.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.0e-55 219.9 235 51.5
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 3.7e-54 215.7 173 56.6
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 4.8e-54 215.3 171 62.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.3e-54 214.5 188 58.0
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.4e-53 211.8 145 68.3
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 7.0e-53 211.5 233 48.9
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-52 209.5 162 61.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.5e-52 208.8 197 55.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.5e-50 203.8 237 47.7
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.2e-50 202.2 208 51.9
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.2e-50 201.4 165 58.2
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.5e-47 193.7 233 46.4
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 4.4e-47 192.2 161 61.5
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-45 185.7 190 54.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-44 184.1 193 51.8
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.9e-43 179.1 132 62.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.7e-38 162.5 145 58.6
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 9.2e-37 157.9 219 39.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 2.0e-36 156.8 110 68.2
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.5e-31 140.6 161 44.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.0e-31 140.2 174 39.7
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.9e-30 136.3 150 46.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 3.7e-30 136.0 106 59.4
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.9e-29 133.7 168 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 3.0e-27 126.3 173 39.3
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-22 110.2 76 65.8
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.1e-17 91.7 86 54.7
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.1e-16 89.7 162 33.3
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.4e-13 80.9 74 47.3
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.6e-11 72.0 111 41.4
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 4.4e-07 59.3 51 47.1
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 4.4e-07 59.3 51 47.1
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 2.2e-06 57.0 58 44.8


User provided reference genes

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