Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.7e-111 404.8 199 100.0
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 5.0e-39 165.2 149 64.4
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 7.0e-25 118.2 140 50.0
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.0e-20 104.4 137 46.7
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.6e-19 99.8 114 50.0
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 4.4e-19 99.0 146 45.2
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 7.5e-19 98.2 138 44.2
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.7e-18 97.1 148 41.9
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 6.4e-18 95.1 138 44.9
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 8.3e-18 94.7 156 41.0
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 8.3e-18 94.7 148 41.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.4e-17 94.0 140 44.3
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 2.4e-17 93.2 156 42.3
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 2.4e-17 93.2 114 47.4
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 2.4e-17 93.2 139 43.2
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.2e-17 92.8 152 40.1
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 3.2e-17 92.8 138 43.5
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 4.1e-17 92.4 143 42.7
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 5.4e-17 92.0 127 46.5
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 7.0e-17 91.7 121 45.5
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 9.2e-17 91.3 113 47.8
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 1.2e-16 90.9 124 44.4
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.6e-16 90.5 121 46.3
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.6e-16 90.5 121 46.3
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 2.0e-16 90.1 124 46.8
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 2.7e-16 89.7 144 42.4
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 2.7e-16 89.7 119 45.4
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.5e-16 89.4 141 41.8
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.5e-16 89.4 141 41.8
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.5e-16 89.4 112 46.4
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 5.9e-16 88.6 156 41.0
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 7.8e-16 88.2 144 42.4
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.0e-15 87.8 111 48.6
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 1.3e-15 87.4 153 41.2
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.7e-15 87.0 121 43.0
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 1.7e-15 87.0 121 43.0
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.3e-15 86.7 157 40.1
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.3e-15 86.7 113 46.9
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 2.3e-15 86.7 119 41.2
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 2.3e-15 86.7 129 41.1
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.3e-15 86.7 111 48.6
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 3.0e-15 86.3 110 48.2
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 3.0e-15 86.3 154 42.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.0e-15 86.3 142 41.5
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 3.0e-15 86.3 111 47.7
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 3.9e-15 85.9 112 48.2
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 3.9e-15 85.9 149 41.6
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.9e-15 85.9 105 49.5
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 3.9e-15 85.9 139 40.3
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.9e-15 85.9 148 41.9
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 3.9e-15 85.9 121 43.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.0e-15 85.5 123 42.3
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 5.0e-15 85.5 137 42.3
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 6.6e-15 85.1 150 40.7
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 6.6e-15 85.1 151 41.7
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 6.6e-15 85.1 124 43.5
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.6e-15 84.7 123 39.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 1.1e-14 84.3 121 46.3
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.1e-14 84.3 149 41.6
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.1e-14 84.3 149 41.6
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.1e-14 84.3 149 41.6
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.1e-14 84.3 146 42.5
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.1e-14 84.3 104 49.0
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.1e-14 84.3 104 49.0
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-14 84.3 148 39.2
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.1e-14 84.3 118 42.4
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.1e-14 84.3 124 42.7
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.5e-14 84.0 105 48.6
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.5e-14 84.0 145 40.7
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.5e-14 84.0 145 40.7
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.9e-14 83.6 112 46.4
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 1.9e-14 83.6 112 46.4
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.9e-14 83.6 138 41.3
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 2.5e-14 83.2 122 41.8
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.5e-14 83.2 148 40.5
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.5e-14 83.2 105 46.7
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 2.5e-14 83.2 106 48.1
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 2.5e-14 83.2 148 41.9
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 3.3e-14 82.8 120 40.0
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 3.3e-14 82.8 112 46.4
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 3.3e-14 82.8 105 47.6
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 3.3e-14 82.8 106 50.0
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 4.3e-14 82.4 123 41.5
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 4.3e-14 82.4 119 45.4
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 4.3e-14 82.4 141 42.6
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 4.3e-14 82.4 111 44.1
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 7.3e-14 81.6 112 44.6
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 9.5e-14 81.3 106 46.2
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 9.5e-14 81.3 119 42.9
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 9.5e-14 81.3 111 43.2
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.6e-13 80.5 119 42.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.6e-13 80.5 148 39.9
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.8e-13 79.7 119 44.5
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.8e-13 79.7 124 44.4
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 3.6e-13 79.3 124 43.5
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 6.2e-13 78.6 152 38.2
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 8.0e-13 78.2 143 37.1
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.1e-12 77.8 125 42.4
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.1e-12 77.8 139 37.4
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.8e-12 77.0 123 42.3
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.3e-12 76.6 116 40.5
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.1e-12 76.3 116 42.2
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 5.2e-12 75.5 139 39.6
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 6.8e-12 75.1 92 48.9
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.2e-11 74.3 92 48.9
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.2e-11 74.3 92 48.9
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.0e-11 73.6 101 42.6
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 2.6e-11 73.2 94 45.7
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 2.6e-11 73.2 95 45.3
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 3.4e-11 72.8 92 44.6
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 7.5e-11 71.6 94 45.7
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.3e-10 70.9 106 42.5
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 2.9e-10 69.7 93 47.3
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 3.7e-10 69.3 92 47.8
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 6.4e-10 68.6 91 45.1
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 6.4e-10 68.6 92 44.6
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 8.3e-10 68.2 111 39.6
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 5.4e-09 65.5 103 38.8
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 1.3e-07 60.8 78 48.7
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 9.5e-06 54.7 94 37.2


User provided reference genes

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