Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g018690 Amaranthus hybridus HOM05D003854 ORTHO05D004415 1.2e-22 109.0 55 100.0
EL10Ac9g21623 Beta vulgaris HOM05D003854 ORTHO05D004415 1.2e-14 82.4 54 75.9
RcHm_v2.0_Chr6g0268341 Rosa chinensis HOM05D003854 ORTHO05D004415 2.7e-11 71.2 55 65.5
Hund00176 Selenicereus undatus HOM05D003854 ORTHO05D004415 1.0e-10 69.3 54 68.5
Prupe.8G083500 Prunus persica HOM05D003854 ORTHO05D004415 1.3e-10 68.9 55 63.6
RcHm_v2.0_Chr6g0268321 Rosa chinensis HOM05D003854 ORTHO05D004415 3.0e-10 67.8 56 62.5
Potri.009G125200 Populus trichocarpa HOM05D003854 ORTHO05D004415 3.9e-10 67.4 51 68.6
Sabra09G0096200 Salix brachista HOM05D003854 ORTHO05D004415 3.9e-10 67.4 51 68.6
FvH4_2g10640 Fragaria vesca HOM05D003854 ORTHO05D004415 6.7e-10 66.6 57 66.7
FAN15G1017 Fragaria x ananassa HOM05D003854 ORTHO05D004415 6.7e-10 66.6 57 66.7
FAN20G2911 Fragaria x ananassa HOM05D003854 ORTHO05D004415 6.7e-10 66.6 57 66.7
FAN24G1697 Fragaria x ananassa HOM05D003854 ORTHO05D004415 6.7e-10 66.6 57 66.7
Cc02_g16850 Coffea canephora HOM05D003854 ORTHO05D004415 1.1e-09 65.9 51 64.7
FAN15G1606 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.1e-09 65.9 51 60.8
Potri.004G163600 Populus trichocarpa HOM05D003854 ORTHO05D004415 1.1e-09 65.9 51 66.7
A07p04500 Brassica napus HOM05D003854 ORTHO05D004415 2.5e-09 64.7 52 63.5
FAN27G2026 Fragaria x ananassa HOM05D003854 ORTHO05D004415 2.5e-09 64.7 57 64.9
BcaC06g36152 Brassica carinata HOM05D003854 ORTHO05D004415 3.3e-09 64.3 52 63.5
BolC7t41138H Brassica oleracea HOM05D003854 ORTHO05D004415 3.3e-09 64.3 52 63.5
AUR62016846 Chenopodium quinoa HOM05D003854 ORTHO05D004415 3.3e-09 64.3 54 61.1
TWI38G0305 Tripterygium wilfordii HOM05D003854 ORTHO05D004415 3.3e-09 64.3 55 60.0
Actinidia20473 Actinidia chinensis HOM05D003854 ORTHO05D004415 4.3e-09 63.9 56 60.7
BolC9t54197H Brassica oleracea HOM05D003854 ORTHO05D004415 4.3e-09 63.9 51 66.7
BraA09t36743Z Brassica rapa HOM05D003854 ORTHO05D004415 4.3e-09 63.9 51 66.7
Sp3g29800 Schrenkiella parvula HOM05D003854 ORTHO05D004415 4.3e-09 63.9 51 62.7
Rhsim05G0067900 Rhododendron simsii HOM05D003854 ORTHO05D004415 5.7e-09 63.5 51 64.7
Sabra04G0109800 Salix brachista HOM05D003854 ORTHO05D004415 5.7e-09 63.5 51 62.7
Aa31LG8G13840 Aethionema arabicum HOM05D003854 ORTHO05D004415 9.7e-09 62.8 56 58.9
BcaC04g23013 Brassica carinata HOM05D003854 ORTHO05D004415 9.7e-09 62.8 51 64.7
C09p13040 Brassica napus HOM05D003854 ORTHO05D004415 9.7e-09 62.8 51 64.7
A09p11030 Brassica napus HOM05D003854 ORTHO05D004415 1.3e-08 62.4 50 66.0
vmacro17417 Vaccinium macrocarpon HOM05D003854 ORTHO05D004415 1.3e-08 62.4 56 62.5
BcaB03g16370 Brassica carinata HOM05D003854 ORTHO05D004415 1.6e-08 62.0 51 60.8
BraA07t28241Z Brassica rapa HOM05D003854 ORTHO05D004415 1.6e-08 62.0 52 59.6
Peaxi162Scf00016g00041 Petunia axillaris HOM05D003854 ORTHO05D004415 1.6e-08 62.0 51 62.7
COL.COLO4_21950 Corchorus olitorius HOM05D003854 ORTHO05D004415 2.2e-08 61.6 52 61.5
TAR376G0190 Trochodendron aralioides HOM05D003854 ORTHO05D004415 2.2e-08 61.6 51 58.8
Thhalv10000231m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 2.8e-08 61.2 51 60.8
Hma1.2p1_0066F.1_g035740 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 2.8e-08 61.2 56 62.5
MBI19_g04330_MAGBIO Magnolia biondii HOM05D003854 ORTHO05D004415 2.8e-08 61.2 50 64.0
Thhalv10022773m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 3.7e-08 60.8 51 60.8
Manes.04G064400 Manihot esculenta HOM05D003854 ORTHO05D004415 3.7e-08 60.8 53 60.4
Ciclev10028796m.g Citrus clementina HOM05D003854 ORTHO05D004415 4.8e-08 60.5 56 58.9
Sed0011434 Sechium edule HOM05D003854 ORTHO05D004415 4.8e-08 60.5 52 61.5
GSVIVG01018810001 Vitis vinifera HOM05D003854 ORTHO05D004415 4.8e-08 60.5 52 57.7
PGR042G3425 Punica granatum HOM05D003854 ORTHO05D004415 6.3e-08 60.1 56 58.9
CAN.G170.108 Capsicum annuum HOM05D003854 ORTHO05D004415 8.2e-08 59.7 56 58.9
ClCG02G004480 Citrullus lanatus HOM05D003854 ORTHO05D004415 8.2e-08 59.7 52 59.6
COL.COLO4_10619 Corchorus olitorius HOM05D003854 ORTHO05D004415 8.2e-08 59.7 56 55.4
Solyc01g110460.4 Solanum lycopersicum HOM05D003854 ORTHO05D004415 8.2e-08 59.7 51 58.8
Sopen01g052590 Solanum pennellii HOM05D003854 ORTHO05D004415 8.2e-08 59.7 51 58.8
Actinidia00577 Actinidia chinensis HOM05D003854 ORTHO05D004415 1.1e-07 59.3 55 54.5
Hma1.2p1_0218F.1_g092290 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 1.1e-07 59.3 57 59.6
MD05G1054700 Malus domestica HOM05D003854 ORTHO05D004415 1.1e-07 59.3 52 57.7
MD10G1062200 Malus domestica HOM05D003854 ORTHO05D004415 1.1e-07 59.3 52 61.5
MELO3C002788.2 Cucumis melo HOM05D003854 ORTHO05D004415 1.4e-07 58.9 52 59.6
Duzib248G1248 Durio zibethinus HOM05D003854 ORTHO05D004415 1.8e-07 58.5 56 53.6
CsaV3_7G000470 Cucumis sativus L. HOM05D003854 ORTHO05D004415 2.4e-07 58.2 52 61.5
ECA248G3380 Erigeron canadensis HOM05D003854 ORTHO05D004415 2.4e-07 58.2 55 52.7
Nn5g29249 Nelumbo nucifera HOM05D003854 ORTHO05D004415 2.4e-07 58.2 56 53.6
Haze_02230 Corylus avellana HOM05D003854 ORTHO05D004415 4.1e-07 57.4 56 58.9
Gorai.011G293600 Gossypium raimondii HOM05D003854 ORTHO05D004415 4.1e-07 57.4 56 58.9
C07p07190 Brassica napus HOM05D003854 ORTHO05D004415 5.3e-07 57.0 56 58.9
QL11p046566 Quercus lobata HOM05D003854 ORTHO05D004415 5.3e-07 57.0 52 57.7
Eucgr.G01738 Eucalyptus grandis HOM05D003854 ORTHO05D004415 6.9e-07 56.6 56 55.4
Gohir.A10G241100 Gossypium hirsutum HOM05D003854 ORTHO05D004415 6.9e-07 56.6 56 58.9
Gohir.A13G086490 Gossypium hirsutum HOM05D003854 ORTHO05D004415 6.9e-07 56.6 56 55.4
GSVIVG01024163001 Vitis vinifera HOM05D003854 ORTHO05D004415 6.9e-07 56.6 56 57.1
CDE04G0582 Ceratophyllum demersum HOM05D003854 ORTHO05D004415 9.0e-07 56.2 55 49.1
A03p45890 Brassica napus HOM05D003854 ORTHO05D004415 1.2e-06 55.8 53 56.6
BraA03t13719Z Brassica rapa HOM05D003854 ORTHO05D004415 1.2e-06 55.8 53 56.6
CiPaw.05G074000 Carya illinoinensis HOM05D003854 ORTHO05D004415 1.5e-06 55.5 56 57.1
Gohir.D13G096525 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.5e-06 55.5 56 53.6
Thecc.02G073800 Theobroma cacao HOM05D003854 ORTHO05D004415 1.5e-06 55.5 56 53.6
Duzib147G1035 Durio zibethinus HOM05D003854 ORTHO05D004415 2.0e-06 55.1 56 57.1
Gohir.D03G010400 Gossypium hirsutum HOM05D003854 ORTHO05D004415 2.0e-06 55.1 49 63.3
Gorai.001G243600 Gossypium raimondii HOM05D003854 ORTHO05D004415 2.0e-06 55.1 56 53.6
Gorai.003G010800 Gossypium raimondii HOM05D003854 ORTHO05D004415 2.0e-06 55.1 49 63.3
Duzib187G0007 Durio zibethinus HOM05D003854 ORTHO05D004415 2.6e-06 54.7 52 57.7
Gohir.A02G169600 Gossypium hirsutum HOM05D003854 ORTHO05D004415 2.6e-06 54.7 49 63.3
Lsat_1_v5_gn_3_44581 Lactuca sativa HOM05D003854 ORTHO05D004415 2.6e-06 54.7 53 54.7
Lj3g0001283 Lotus japonicus HOM05D003854 ORTHO05D004415 2.6e-06 54.7 52 55.8
CANSAT11G1548 Cannabis sativa HOM05D003854 ORTHO05D004415 3.4e-06 54.3 52 53.8
Cpa.g.sc150.10 Carica papaya HOM05D003854 ORTHO05D004415 3.4e-06 54.3 52 51.9
Ca_20939_v3 Cicer arietinum L. HOM05D003854 ORTHO05D004415 3.4e-06 54.3 52 57.7
ECA246G0289 Erigeron canadensis HOM05D003854 ORTHO05D004415 3.4e-06 54.3 55 50.9
HanXRQChr15g0478351 Helianthus annuus HOM05D003854 ORTHO05D004415 3.4e-06 54.3 53 52.8
Lj5A188T38 Lonicera japonica HOM05D003854 ORTHO05D004415 3.4e-06 54.3 56 51.8
Thecc.10G037600 Theobroma cacao HOM05D003854 ORTHO05D004415 4.5e-06 53.9 51 56.9
arahy.Tifrunner.gnm1.ann1.3VNM1Z Arachis hypogaea HOM05D003854 ORTHO05D004415 5.9e-06 53.5 45 62.2
Glyma.12G036600 Glycine max HOM05D003854 ORTHO05D004415 5.9e-06 53.5 55 45.5
THA.LOC104807290 Tarenaya hassleriana HOM05D003854 ORTHO05D004415 5.9e-06 53.5 52 51.9
Thecc.01G021700 Theobroma cacao HOM05D003854 ORTHO05D004415 5.9e-06 53.5 47 61.7
CiPaw.06G127600 Carya illinoinensis HOM05D003854 ORTHO05D004415 7.7e-06 53.1 56 58.9
Glyma.11G110300 Glycine max HOM05D003854 ORTHO05D004415 7.7e-06 53.1 52 50.0
Phvul.011G038300 Phaseolus vulgaris HOM05D003854 ORTHO05D004415 7.7e-06 53.1 52 53.8
Aqoxy6G02342 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 1.0e-05 52.8 56 51.8


User provided reference genes

Program Settings